Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 3.9e-118 428.3 242 100.0
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 3.4e-90 335.5 217 82.9
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.3e-60 237.3 232 62.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 9.0e-59 231.1 230 63.9
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.1e-56 224.2 233 58.8
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 4.2e-56 222.2 217 64.1
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 5.5e-56 221.9 234 57.7
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.7e-55 219.5 232 66.4
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 9.7e-53 211.1 234 56.0
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 6.3e-52 208.4 234 55.6
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 8.2e-52 208.0 228 61.0
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 4.2e-48 195.7 234 54.7
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-47 194.1 198 71.2
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.2e-44 181.4 235 56.2
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.2e-44 181.4 235 56.2
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.5e-42 177.2 86 100.0
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 7.2e-40 168.3 228 50.4
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.4e-38 164.1 231 48.5
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.4e-38 164.1 240 48.3
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.8e-38 163.7 228 50.4
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 3.3e-37 159.5 246 48.8
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.3e-36 157.5 230 50.4
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 2.8e-36 156.4 230 48.7
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-35 153.7 235 48.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.3e-33 147.5 232 49.1
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-33 146.0 86 87.2
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 8.5e-33 144.8 226 44.7
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.5e-32 143.3 224 47.8
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.2e-32 142.9 216 48.1
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 7.2e-32 141.7 234 47.0
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 9.4e-32 141.4 180 48.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.7e-31 139.8 218 50.0
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 4.7e-31 139.0 228 45.2
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 4.7e-31 139.0 228 45.2
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 6.1e-31 138.7 224 46.9
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.1e-31 138.7 221 46.2
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.4e-30 137.5 210 44.8
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 2.3e-30 136.7 230 43.9
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 4.0e-30 136.0 229 45.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 5.2e-30 135.6 193 47.2
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.1e-29 134.4 216 51.4
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-29 134.4 176 51.1
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.1e-29 134.4 225 44.4
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 1.1e-29 134.4 222 44.1
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.1e-29 134.4 183 47.5
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.5e-29 134.0 220 45.9
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 2.0e-29 133.7 93 78.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.6e-29 133.3 188 59.0
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.3e-29 132.9 229 43.2
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 4.4e-29 132.5 211 43.6
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 5.7e-29 132.1 238 41.6
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 7.5e-29 131.7 219 42.9
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.2e-28 130.2 219 49.3
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 2.8e-28 129.8 201 45.3
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.8e-28 129.8 182 47.8
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.7e-28 129.4 208 45.2
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 4.8e-28 129.0 218 43.6
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 4.8e-28 129.0 217 42.9
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 6.3e-28 128.6 220 43.6
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 8.2e-28 128.3 225 43.1
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.1e-27 127.9 177 46.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.4e-27 127.5 216 44.4
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.8e-27 127.1 183 48.1
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.8e-27 127.1 214 42.5
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 5.3e-27 125.6 219 40.6
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 9.1e-27 124.8 221 43.4
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.2e-26 124.4 227 41.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 2.0e-26 123.6 217 41.0
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.5e-26 122.5 224 40.6
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.2e-25 120.2 209 43.5
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 2.9e-25 119.8 230 40.9
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 2.9e-25 119.8 230 40.9
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 2.9e-25 119.8 218 48.6
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.8e-25 119.4 203 42.4
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 5.0e-25 119.0 235 39.6
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 5.0e-25 119.0 219 44.7
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 6.5e-25 118.6 227 41.4
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 8.5e-25 118.2 197 42.6
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.1e-24 117.9 201 41.8
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.9e-24 117.1 195 43.6
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 3.2e-24 116.3 213 41.3
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.2e-24 115.9 221 44.8
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 9.4e-24 114.8 200 44.5
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.2e-23 114.4 225 44.0
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.6e-23 114.0 216 42.1
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.1e-23 113.6 221 43.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.7e-23 113.2 223 49.8
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.7e-23 112.5 183 42.1
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.7e-23 112.5 244 37.3
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 8.0e-23 111.7 211 48.8
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 8.0e-23 111.7 223 49.8
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.0e-22 111.3 240 45.0
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.8e-22 110.5 191 41.9
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 2.3e-22 110.2 236 40.7
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 3.0e-22 109.8 232 38.8
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.0e-22 109.4 232 37.5
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.2e-22 109.0 215 40.5
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.5e-21 107.5 232 37.1
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.0e-21 107.1 180 40.6
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 3.4e-21 106.3 86 67.4
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.4e-21 106.3 182 42.9
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 4.4e-21 105.9 194 40.2
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.4e-21 105.9 209 42.6
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.5e-21 105.1 224 38.8
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 7.5e-21 105.1 122 53.3
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.3e-20 104.4 164 49.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.7e-20 104.0 180 41.7
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.2e-20 103.6 102 60.8
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 4.8e-20 102.4 169 43.8
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 6.3e-20 102.1 173 41.6
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 8.3e-20 101.7 93 63.4
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 8.3e-20 101.7 240 36.7
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-19 101.3 111 60.4
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.4e-19 100.9 200 40.0
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-19 100.9 197 36.0
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-19 100.9 229 34.1
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 9.1e-19 98.2 208 43.3
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.2e-18 97.8 191 39.8
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.7e-18 96.7 90 62.2
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.5e-18 95.9 220 35.5
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.5e-18 95.9 189 39.7
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.0e-17 94.7 198 37.9
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 6.5e-17 92.0 235 34.9
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.5e-17 92.0 164 46.3
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 4.7e-15 85.9 172 37.8
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.3e-14 83.6 227 33.9
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 5.7e-13 79.0 90 56.7
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 2.2e-12 77.0 171 37.4
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 6.3e-12 75.5 196 32.7
BraA10t43721Z Brassica rapa HOM05D005029 ORTHO05D006052 2.4e-11 73.6 42 92.9
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.4e-11 73.6 85 49.4
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.4e-11 73.6 75 49.3
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.1e-11 73.2 217 30.9
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 4.1e-11 72.8 151 35.1
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 7.0e-11 72.0 101 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.6e-10 70.9 80 47.5
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.3e-09 67.8 193 31.1
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.3e-09 67.0 95 40.0
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 2.8e-07 60.1 41 78.0
C07p26820 Brassica napus HOM05D005029 ORTHO05D006052 4.0e-06 56.2 37 70.3


User provided reference genes

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