Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 1.3e-153 546.6 328 100.0
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 2.2e-140 502.7 322 95.7
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 4.6e-130 468.4 334 90.1
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 1.3e-129 466.8 336 82.1
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 8.3e-124 447.6 334 86.5
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 8.1e-119 431.0 349 80.8
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 4.4e-117 425.2 349 81.1
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.4e-115 419.5 350 78.9
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 4.1e-115 418.7 347 80.4
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 1.6e-111 406.8 340 79.7
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 2.8e-111 406.0 340 80.6
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 7.6e-109 397.9 340 79.4
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 2.2e-108 396.4 345 78.8
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 2.4e-107 392.9 341 79.2
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.4e-99 367.1 349 73.6
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 8.7e-97 357.8 345 69.0
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 8.7e-97 357.8 350 72.0
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 2.0e-93 346.7 342 72.8
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 7.9e-90 334.7 347 69.5
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 1.9e-83 313.5 338 68.9
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 3.5e-74 282.7 343 64.1
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 1.3e-71 274.2 339 63.7
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 4.8e-71 272.3 336 63.7
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 5.0e-68 262.3 334 56.9
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 2.2e-63 246.9 329 52.0
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 4.8e-63 245.7 339 56.0
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 2.6e-61 240.0 361 56.0
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 7.7e-61 238.4 330 52.1
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 1.3e-60 237.7 330 52.1
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 2.2e-60 236.9 331 53.2
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 8.5e-60 235.0 325 59.7
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 1.9e-59 233.8 332 54.8
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 5.5e-59 232.3 368 47.3
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 6.7e-57 225.3 339 57.8
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 6.7e-57 225.3 339 57.8
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 8.8e-57 224.9 391 43.2
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.5e-56 224.2 389 44.0
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 5.7e-56 222.2 389 44.0
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 7.4e-56 221.9 389 44.0
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 9.7e-56 221.5 335 55.8
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 9.7e-56 221.5 393 44.0
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.8e-55 219.9 334 56.6
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 4.8e-55 219.2 391 43.5
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.8e-54 217.2 380 43.4
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 2.4e-54 216.9 363 43.0
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 5.9e-53 212.2 389 43.2
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.7e-52 210.7 369 41.7
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.7e-52 210.7 369 41.7
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 2.2e-52 210.3 386 45.1
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 2.2e-52 210.3 391 44.0
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 5.0e-52 209.1 343 54.2
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 2.5e-51 206.8 334 56.0
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 9.4e-51 204.9 392 46.7
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 2.1e-50 203.8 370 43.5
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 2.7e-50 203.4 372 43.3
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 4.7e-50 202.6 379 42.5
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 1.4e-49 201.1 375 49.6
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 2.3e-49 200.3 371 47.2
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.3e-49 200.3 373 50.1
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 5.2e-49 199.1 381 49.6
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.1e-48 198.0 369 50.1
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 1.1e-48 198.0 386 44.8
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.5e-48 197.6 382 48.7
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.5e-48 197.6 391 48.8
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 2.0e-48 197.2 388 44.1
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 2.6e-48 196.8 387 48.1
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.3e-48 196.4 391 46.5
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 7.4e-48 195.3 329 43.5
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 7.4e-48 195.3 383 45.2
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 9.7e-48 194.9 389 49.1
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 1.7e-47 194.1 386 44.3
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 3.7e-47 193.0 390 46.7
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 4.8e-47 192.6 393 45.5
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.4e-46 190.3 378 40.2
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 4.1e-46 189.5 389 47.6
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 9.1e-46 188.3 341 50.7
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 4.5e-45 186.0 356 48.6
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 5.9e-45 185.7 388 47.2
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 5.9e-45 185.7 378 44.4
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 7.7e-45 185.3 378 41.0
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.0e-44 184.9 360 40.3
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 1.0e-44 184.9 382 47.1
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 6.5e-44 182.2 392 46.4
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 6.5e-44 182.2 392 39.8
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 1.1e-43 181.4 386 42.0
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 1.9e-43 180.6 392 46.9
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 3.2e-43 179.9 392 39.5
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 4.2e-43 179.5 381 47.0
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 4.2e-43 179.5 385 40.5
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 7.2e-43 178.7 378 48.1
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.6e-42 177.6 370 44.9
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 1.6e-42 177.6 395 41.5
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 2.1e-42 177.2 435 42.3
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 2.7e-42 176.8 373 40.5
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 2.7e-42 176.8 363 47.4
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 3.6e-42 176.4 332 48.5
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.6e-42 176.4 367 40.3
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 4.7e-42 176.0 394 38.8
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 6.1e-42 175.6 376 47.1
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.8e-41 174.1 369 39.0
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 2.3e-41 173.7 392 46.4
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 4.0e-41 172.9 371 40.2
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 4.0e-41 172.9 383 46.0
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 5.2e-41 172.6 380 46.1
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 6.7e-41 172.2 444 38.1
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 8.8e-41 171.8 372 44.9
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 2.0e-40 170.6 389 44.5
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 2.2e-39 167.2 378 36.8
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 2.2e-39 167.2 389 45.0
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 2.8e-39 166.8 392 46.7
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 2.8e-39 166.8 386 43.5
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 6.3e-39 165.6 393 37.4
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 8.2e-39 165.2 388 45.4
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 1.1e-38 164.9 369 44.2
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 1.4e-38 164.5 378 37.8
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 1.4e-38 164.5 387 37.7
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 1.8e-38 164.1 416 37.0
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 4.1e-38 162.9 370 47.0
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 9.1e-38 161.8 400 36.8
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 9.1e-38 161.8 375 46.4
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 2.7e-37 160.2 420 33.3
BcaB03g16595 Brassica carinata HOM05D004052 ORTHO05D004694 4.5e-37 159.5 151 68.2
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 5.9e-37 159.1 333 41.4
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 2.9e-36 156.8 372 43.3
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 2.9e-36 156.8 381 43.6
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 5.0e-36 156.0 358 45.5
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 4.2e-35 152.9 390 37.4
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 5.5e-35 152.5 325 39.4
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 7.2e-35 152.1 380 42.9
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 9.4e-35 151.8 386 41.7
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 1.6e-34 151.0 391 36.8
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 2.1e-34 150.6 315 41.0
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.7e-34 150.2 352 44.9
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 3.0e-33 146.7 389 42.9
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 2.0e-32 144.1 363 46.3
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.3e-31 141.4 365 40.0
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.8e-31 140.2 374 43.0
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 2.4e-30 137.1 341 43.4
BcaB03g15049 Brassica carinata HOM05D004052 ORTHO05D004694 3.1e-30 136.7 143 65.0
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 7.0e-30 135.6 373 33.2
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 2.0e-29 134.0 356 43.5
BcaB03g15566 Brassica carinata HOM05D004052 ORTHO05D004694 5.9e-29 132.5 125 68.0
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 7.7e-29 132.1 356 43.0
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 7.7e-29 132.1 295 45.1
BcaB03g15581 Brassica carinata HOM05D004052 ORTHO05D004694 5.0e-28 129.4 127 66.1
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 2.8e-26 123.6 304 42.8
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 4.7e-26 122.9 343 33.2
BcaB03g15574 Brassica carinata HOM05D004052 ORTHO05D004694 1.0e-25 121.7 120 65.8
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 2.3e-25 120.6 379 40.1
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 2.0e-24 117.5 329 40.7
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 4.4e-24 116.3 359 38.2
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 7.5e-24 115.5 364 37.6
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 1.3e-23 114.8 344 34.0
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 2.2e-23 114.0 189 54.0
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 8.3e-23 112.1 108 59.3
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.1e-22 111.7 355 34.1
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 1.6e-18 97.8 173 39.3
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 4.0e-17 93.2 348 39.1
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 8.9e-17 92.0 393 36.1
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 1.5e-16 91.3 95 55.8
BcaB03g15788 Brassica carinata HOM05D004052 ORTHO05D004694 2.9e-15 87.0 100 60.0
Oeu009879.2 Olea europaea HOM05D004052 ORTHO05D004694 8.6e-12 75.5 178 33.7
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 6.2e-10 69.3 409 31.5
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 1.4e-09 68.2 435 32.6
SEGI_00111 Sequoiadendron giganteum HOM05D000666 ORTHO05D001727 6.8e-09 65.9 102 40.2
HPP92_024761 Vanilla planifolia HOM05D004052 ORTHO05D004694 1.7e-07 61.2 355 26.8
Os05g0514500 Oryza sativa ssp. japonica HOM05D043041 ORTHO05D049692 2.2e-07 60.8 108 42.6
Nitab4.5_0000754g0110 Nicotiana tabacum HOM05D000666 ORTHO05D001727 1.1e-06 58.5 254 31.1
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 1.4e-06 58.2 424 28.1
Actinidia03751 Actinidia chinensis HOM05D000666 ORTHO05D001727 1.9e-06 57.8 303 25.4
Gorai.006G168600 Gossypium raimondii HOM05D000666 ORTHO05D001727 1.9e-06 57.8 279 26.9
CSS0026079 Camellia sinensis var. sinensis HOM05D000666 ORTHO05D001727 3.2e-06 57.0 302 26.2
CSS0049299 Camellia sinensis var. sinensis HOM05D000666 ORTHO05D001727 3.2e-06 57.0 302 26.2
MBI14_g17614_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001727 3.2e-06 57.0 190 29.5
PSO339G6671 Papaver somniferum HOM05D000666 ORTHO05D001727 3.2e-06 57.0 97 43.3
Sabra06G0103100 Salix brachista HOM05D000666 ORTHO05D001727 3.2e-06 57.0 277 26.7
Thecc.09G261500 Theobroma cacao HOM05D000666 ORTHO05D001727 3.2e-06 57.0 337 25.8
Actinidia19713 Actinidia chinensis HOM05D000666 ORTHO05D001727 4.1e-06 56.6 100 45.0
TWI79G0235 Tripterygium wilfordii HOM05D000666 ORTHO05D001727 4.1e-06 56.6 195 31.8
Ca_22405_v3 Cicer arietinum L. HOM05D000666 ORTHO05D001727 5.4e-06 56.2 292 26.7
FAN14G2440 Fragaria x ananassa HOM05D000666 ORTHO05D001727 5.4e-06 56.2 183 33.3
Lalb_Chr19g0137441 Lupinus albus HOM05D000666 ORTHO05D001727 5.4e-06 56.2 103 42.7
FAN11G0949 Fragaria x ananassa HOM05D000666 ORTHO05D001727 7.0e-06 55.8 353 25.8
TAR636G1469 Trochodendron aralioides HOM05D000666 ORTHO05D001727 7.0e-06 55.8 276 27.5
FAN05G1417 Fragaria x ananassa HOM05D000666 ORTHO05D001727 9.2e-06 55.5 187 32.6
Lj5g0006568 Lotus japonicus HOM05D000666 ORTHO05D001727 9.2e-06 55.5 272 25.4
Peaxi162Scf01604g00017 Petunia axillaris HOM05D000666 ORTHO05D001727 9.2e-06 55.5 253 30.0


User provided reference genes

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