Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 6.7e-117 424.1 224 100.0
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 1.5e-116 422.9 224 99.6
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 2.0e-116 422.5 224 99.6
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 1.1e-111 406.8 224 96.4
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 7.2e-111 404.1 224 95.5
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 4.7e-110 401.4 223 94.6
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 6.7e-109 397.5 226 90.7
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 5.3e-106 387.9 221 89.1
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 2.0e-105 386.0 226 92.5
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 5.9e-105 384.4 224 88.4
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.7e-104 382.9 224 86.2
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 2.2e-104 382.5 217 90.8
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 1.5e-103 379.8 221 86.9
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 1.2e-97 360.1 217 83.4
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 1.7e-96 356.3 224 79.9
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.5e-95 353.2 217 79.7
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 2.3e-93 345.9 224 77.2
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 4.0e-93 345.1 224 77.2
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 5.2e-93 344.7 224 77.7
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 6.8e-93 344.4 218 78.0
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 8.8e-93 344.0 224 77.2
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 3.4e-92 342.0 218 78.4
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 9.8e-92 340.5 224 76.8
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 4.9e-91 338.2 230 75.7
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 1.1e-90 337.0 220 80.0
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 1.4e-90 336.7 218 78.0
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 2.4e-90 335.9 224 74.6
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 9.2e-90 334.0 221 75.6
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 1.6e-89 333.2 224 74.6
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 2.0e-89 332.8 221 74.7
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 2.0e-89 332.8 216 77.3
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 2.7e-89 332.4 224 75.9
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 7.7e-89 330.9 211 77.7
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 7.7e-89 330.9 224 74.1
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 7.7e-89 330.9 207 79.2
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 1.3e-88 330.1 217 74.7
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 6.6e-88 327.8 224 74.1
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 8.6e-88 327.4 217 75.1
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 1.5e-87 326.6 217 75.6
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 3.3e-87 325.5 216 74.5
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.3e-87 325.5 242 69.8
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 4.3e-87 325.1 217 73.7
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 5.6e-87 324.7 221 73.3
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 7.3e-87 324.3 214 75.2
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 7.3e-87 324.3 214 76.6
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.2e-86 323.6 217 75.1
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 2.1e-86 322.8 220 74.5
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 2.8e-86 322.4 224 74.6
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 3.6e-86 322.0 224 72.8
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.7e-86 321.6 224 75.4
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 1.0e-85 320.5 243 69.5
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 2.3e-85 319.3 216 74.1
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 6.8e-85 317.8 217 71.4
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.2e-84 317.0 216 71.3
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 1.2e-84 317.0 224 71.4
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 3.4e-84 315.5 212 75.0
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 4.4e-84 315.1 216 75.9
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 4.4e-84 315.1 216 73.1
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 4.4e-84 315.1 217 73.3
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 5.7e-84 314.7 217 73.3
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 7.5e-84 314.3 216 72.2
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 2.9e-83 312.4 216 71.8
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 1.4e-82 310.1 216 71.8
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 1.8e-82 309.7 217 71.9
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 2.4e-82 309.3 217 70.5
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 4.1e-82 308.5 224 69.2
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.4e-82 308.1 219 72.6
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 5.4e-82 308.1 224 70.5
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 7.0e-82 307.8 211 73.9
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 2.0e-81 306.2 257 67.3
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 4.6e-81 305.1 211 73.5
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.7e-80 303.1 219 72.1
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 3.9e-80 302.0 217 74.2
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 8.6e-80 300.8 218 69.3
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 8.6e-80 300.8 222 68.5
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 1.0e-77 293.9 224 64.7
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.8e-77 293.1 228 68.0
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 1.8e-77 293.1 193 75.6
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 3.1e-77 292.4 207 74.4
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 5.2e-77 291.6 191 77.5
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 4.4e-76 288.5 188 77.7
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 7.5e-76 287.7 211 70.1
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 2.4e-74 282.7 217 68.7
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 7.0e-74 281.2 246 60.6
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 1.0e-72 277.3 260 61.2
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 2.3e-72 276.2 225 67.1
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 4.3e-71 271.9 247 62.3
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 1.2e-70 270.4 214 65.4
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 6.2e-70 268.1 226 62.8
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 8.1e-70 267.7 178 74.7
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 3.4e-68 262.3 219 63.9
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.3e-67 260.4 214 62.1
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 8.3e-67 257.7 223 64.1
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 4.6e-65 251.9 207 62.8
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 3.3e-63 245.7 265 57.4
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.7e-59 233.4 217 58.1
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 2.7e-57 226.1 154 72.7
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 3.3e-55 219.2 153 73.9
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 5.6e-55 218.4 195 61.5
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 9.6e-55 217.6 208 58.2
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 2.1e-54 216.5 160 66.9
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 3.6e-54 215.7 214 55.6
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 3.4e-52 209.1 224 53.6
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 6.0e-49 198.4 224 51.3
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 2.4e-45 186.4 143 65.7
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 9.3e-42 174.5 201 53.2
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 3.0e-40 169.5 225 44.4
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 5.1e-40 168.7 161 54.0
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 5.8e-36 155.2 150 52.7
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.9e-35 152.9 105 77.1
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 1.1e-31 141.0 383 31.3
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.1e-30 136.7 145 55.9
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 3.7e-30 136.0 85 78.8
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 3.2e-26 122.9 84 70.2
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 8.2e-22 108.2 70 74.3
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 2.6e-20 103.2 66 80.3
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 2.5e-18 96.7 67 70.1
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 4.2e-18 95.9 51 86.3
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 1.8e-16 90.5 66 72.7
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 5.1e-16 89.0 191 34.0
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 6.7e-16 88.6 67 68.7
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.3e-14 84.3 57 77.2
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 2.8e-14 83.2 53 73.6
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 2.6e-12 76.6 49 77.6
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.2e-11 73.6 45 84.4
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 8.5e-11 71.6 87 46.0
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 9.4e-10 68.2 48 68.8


User provided reference genes

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