Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25638 Brassica carinata HOM05D000459 ORTHO05D021643 3.0e-56 221.5 100 100.0
C05p13800 Brassica napus HOM05D000459 ORTHO05D021643 6.8e-53 210.3 100 96.0
BraA06t24351Z Brassica rapa HOM05D000459 ORTHO05D021643 1.1e-26 123.2 58 94.8
A06p11650 Brassica napus HOM05D009689 ORTHO05D012057 1.2e-25 119.8 62 88.7
BolC4t23314H Brassica oleracea HOM05D000459 ORTHO05D021643 1.2e-20 103.2 105 53.3
Sp4g14340 Schrenkiella parvula HOM05D000459 ORTHO05D021643 7.6e-20 100.5 99 51.5
C04p17670 Brassica napus HOM05D032973 ORTHO05D021643 6.9e-13 77.4 80 53.8
BraA06t24350Z Brassica rapa HOM05D009689 ORTHO05D012057 7.6e-12 73.9 100 38.0
AT1G80400 Arabidopsis thaliana HOM05D000459 ORTHO05D002429 2.2e-11 72.4 125 33.6
Carub.0002s2717 Capsella rubella HOM05D000459 ORTHO05D002429 4.9e-11 71.2 125 35.2
Atru.chr1.3221 Acer truncatum HOM05D000459 ORTHO05D002429 1.9e-10 69.3 127 34.6
C02p37350 Brassica napus HOM05D000459 ORTHO05D002429 1.9e-10 69.3 129 33.3
BcaB05g25271 Brassica carinata HOM05D000459 ORTHO05D002429 2.5e-10 68.9 123 35.0
BolC5t30117H Brassica oleracea HOM05D009689 ORTHO05D012057 2.5e-10 68.9 99 33.3
BcaC03g15970 Brassica carinata HOM05D000459 ORTHO05D002429 3.2e-10 68.6 129 33.3
BolC2t09745H Brassica oleracea HOM05D000459 ORTHO05D002429 3.2e-10 68.6 129 33.3
Aa31LG4G670 Aethionema arabicum HOM05D000459 ORTHO05D002429 9.3e-10 67.0 127 32.3
AL2G41100 Arabidopsis lyrata HOM05D000459 ORTHO05D002429 1.6e-09 66.2 130 34.6
CARHR074840 Cardamine hirsuta HOM05D000459 ORTHO05D002429 4.6e-09 64.7 129 31.8
Sp5g35410 Schrenkiella parvula HOM05D000459 ORTHO05D002429 4.6e-09 64.7 128 32.0
Lalb_Chr25g0279591 Lupinus albus HOM05D000459 ORTHO05D002429 6.0e-09 64.3 127 32.3
BcaC05g25639 Brassica carinata HOM05D009689 ORTHO05D012057 7.9e-09 63.9 99 32.3
A02p23590 Brassica napus HOM05D000459 ORTHO05D002429 7.9e-09 63.9 128 31.2
BraA02t07351Z Brassica rapa HOM05D000459 ORTHO05D002429 7.9e-09 63.9 128 31.2
THA.LOC104812473 Tarenaya hassleriana HOM05D000459 ORTHO05D002429 1.0e-08 63.5 127 32.3
Thhalv10018651m.g Eutrema salsugineum HOM05D000459 ORTHO05D002429 1.8e-08 62.8 122 29.5
AL1G27710 Arabidopsis lyrata HOM05D000459 ORTHO05D017393 2.3e-08 62.4 97 41.2
Manes.04G121100 Manihot esculenta HOM05D000459 ORTHO05D002429 2.3e-08 62.4 126 33.3
Sc15g0001230 Simmondsia chinensis HOM05D000459 ORTHO05D002429 2.3e-08 62.4 123 32.5
Cpa.g.sc946.2 Carica papaya HOM05D000459 ORTHO05D002429 3.0e-08 62.0 126 32.5
CiPaw.08G015400 Carya illinoinensis HOM05D000459 ORTHO05D002429 3.0e-08 62.0 122 32.8
Thecc.06G082400 Theobroma cacao HOM05D000459 ORTHO05D002429 3.0e-08 62.0 129 31.8
MD09G1215300 Malus domestica HOM05D000459 ORTHO05D002429 3.9e-08 61.6 127 33.1
MD17G1198000 Malus domestica HOM05D000459 ORTHO05D002429 3.9e-08 61.6 128 32.0
RcHm_v2.0_Chr2g0137381 Rosa chinensis HOM05D000459 ORTHO05D002429 3.9e-08 61.6 127 31.5
Peaxi162Scf00256g00712 Petunia axillaris HOM05D000459 ORTHO05D002429 5.1e-08 61.2 124 31.5
GSVIVG01017155001 Vitis vinifera HOM05D000459 ORTHO05D002429 5.1e-08 61.2 101 34.7
Ah.01g020990 Amaranthus hybridus HOM05D002927 ORTHO05D003841 6.7e-08 60.8 125 32.8
FvH4_6g30890 Fragaria vesca HOM05D000459 ORTHO05D002429 6.7e-08 60.8 129 31.0
FAN02G3498 Fragaria x ananassa HOM05D000459 ORTHO05D002429 6.7e-08 60.8 129 31.0
FAN14G1814 Fragaria x ananassa HOM05D000459 ORTHO05D002429 6.7e-08 60.8 129 31.0
CiPaw.01G240800 Carya illinoinensis HOM05D000459 ORTHO05D002429 1.1e-07 60.1 129 31.8
Duzib235G1543 Durio zibethinus HOM05D000459 ORTHO05D002429 1.1e-07 60.1 128 32.0
Gohir.D10G072700 Gossypium hirsutum HOM05D000459 ORTHO05D002429 1.1e-07 60.1 127 32.3
Gorai.011G078300 Gossypium raimondii HOM05D000459 ORTHO05D002429 1.1e-07 60.1 127 32.3
Prupe.3G074400 Prunus persica HOM05D000459 ORTHO05D002429 1.1e-07 60.1 130 30.0
Phvul.005G172800 Phaseolus vulgaris HOM05D000459 ORTHO05D002429 1.5e-07 59.7 126 30.2
Actinidia13426 Actinidia chinensis HOM05D000459 ORTHO05D002429 1.9e-07 59.3 124 31.5
BraA08t33763Z Brassica rapa HOM05D000459 ORTHO05D002429 1.9e-07 59.3 130 28.5
Cfa002047 Carpinus fangiana HOM05D000459 ORTHO05D002429 1.9e-07 59.3 127 31.5
AUR62016427 Chenopodium quinoa HOM05D000459 ORTHO05D002429 1.9e-07 59.3 124 29.8
Ciclev10025899m.g Citrus clementina HOM05D000459 ORTHO05D002429 1.9e-07 59.3 128 32.8
Gorai.010G227900 Gossypium raimondii HOM05D000459 ORTHO05D002429 1.9e-07 59.3 127 32.3
AT1G15600 Arabidopsis thaliana HOM05D009689 ORTHO05D012057 2.5e-07 58.9 102 35.3
A01p05790 Brassica napus HOM05D000459 ORTHO05D002429 2.5e-07 58.9 122 31.1
C01p06360 Brassica napus HOM05D000459 ORTHO05D002429 2.5e-07 58.9 122 31.1
BolC1t00632H Brassica oleracea HOM05D000459 ORTHO05D002429 2.5e-07 58.9 122 31.1
BraA01t00548Z Brassica rapa HOM05D000459 ORTHO05D002429 2.5e-07 58.9 122 31.1
CiPaw.02G152500 Carya illinoinensis HOM05D000459 ORTHO05D002429 2.5e-07 58.9 127 30.7
CDE07G0909 Ceratophyllum demersum HOM05D000459 ORTHO05D002429 2.5e-07 58.9 122 31.1
Glyma.15G012900 Glycine max HOM05D000459 ORTHO05D002429 2.5e-07 58.9 126 29.4
arahy.Tifrunner.gnm1.ann1.UE2Z0H Arachis hypogaea HOM05D000459 ORTHO05D002429 3.3e-07 58.5 124 29.0
BcaC09g52050 Brassica carinata HOM05D000459 ORTHO05D002429 3.3e-07 58.5 122 31.1
COL.COLO4_30326 Corchorus olitorius HOM05D000459 ORTHO05D002429 3.3e-07 58.5 132 31.8
Haze_16460 Corylus avellana HOM05D000459 ORTHO05D002429 3.3e-07 58.5 127 31.5
Thhalv10025242m.g Eutrema salsugineum HOM05D000459 ORTHO05D002429 3.3e-07 58.5 122 30.3
HanXRQChr13g0409501 Helianthus annuus HOM05D000459 ORTHO05D002429 3.3e-07 58.5 102 33.3
Lj3g0026922 Lotus japonicus HOM05D000459 ORTHO05D002429 3.3e-07 58.5 123 31.7
Sp7g30370 Schrenkiella parvula HOM05D000459 ORTHO05D002429 3.3e-07 58.5 122 30.3
CDE06G0159 Ceratophyllum demersum HOM05D000459 ORTHO05D002429 4.3e-07 58.2 122 30.3
Glyma.13G361000 Glycine max HOM05D000459 ORTHO05D002429 4.3e-07 58.2 126 29.4
Actinidia08832 Actinidia chinensis HOM05D000459 ORTHO05D002429 5.7e-07 57.8 122 29.5
EL10Ac9g21979 Beta vulgaris HOM05D000459 ORTHO05D002429 5.7e-07 57.8 124 28.2
FAN09G4493 Fragaria x ananassa HOM05D000459 ORTHO05D002429 5.7e-07 57.8 129 30.2
Gohir.A10G078800 Gossypium hirsutum HOM05D000459 ORTHO05D002429 5.7e-07 57.8 129 31.0
Gohir.D06G194000 Gossypium hirsutum HOM05D000459 ORTHO05D002429 5.7e-07 57.8 127 29.9
Hund09177 Selenicereus undatus HOM05D000459 ORTHO05D002429 5.7e-07 57.8 124 29.0
Ah.14g081360 Amaranthus hybridus HOM05D000459 ORTHO05D002429 7.4e-07 57.4 128 32.0
BcaC01g01012 Brassica carinata HOM05D000459 ORTHO05D002429 7.4e-07 57.4 128 28.9
A09p61300 Brassica napus HOM05D000459 ORTHO05D017393 7.4e-07 57.4 97 34.0
C03p87250 Brassica napus HOM05D000459 ORTHO05D002429 7.4e-07 57.4 129 27.9
BolC3t21026H Brassica oleracea HOM05D000459 ORTHO05D002429 7.4e-07 57.4 129 27.9
Gohir.A06G187900 Gossypium hirsutum HOM05D000459 ORTHO05D002429 7.4e-07 57.4 127 31.5
Lj5g0025665 Lotus japonicus HOM05D000459 ORTHO05D002429 7.4e-07 57.4 119 29.4
Hund06599 Selenicereus undatus HOM05D000459 ORTHO05D002429 7.4e-07 57.4 118 33.1
arahy.Tifrunner.gnm1.ann1.LWVE23 Arachis hypogaea HOM05D000459 ORTHO05D002429 9.6e-07 57.0 126 28.6
arahy.Tifrunner.gnm1.ann1.MM9B4U Arachis hypogaea HOM05D000459 ORTHO05D002429 9.6e-07 57.0 126 28.6
CARHR016140 Cardamine hirsuta HOM05D009689 ORTHO05D012057 9.6e-07 57.0 99 30.3
Glyma.04G071800 Glycine max HOM05D000459 ORTHO05D002429 9.6e-07 57.0 120 30.0
VMungo1080G1150 Vigna mungo HOM05D000459 ORTHO05D002429 9.6e-07 57.0 126 27.8
AL7G19170 Arabidopsis lyrata HOM05D000459 ORTHO05D002429 1.3e-06 56.6 123 28.5
AT4G32600 Arabidopsis thaliana HOM05D000459 ORTHO05D002429 1.3e-06 56.6 123 30.9
BraA09t41501Z Brassica rapa HOM05D000459 ORTHO05D017393 1.3e-06 56.6 97 34.0
Carub.0007s0795 Capsella rubella HOM05D000459 ORTHO05D002429 1.3e-06 56.6 123 28.5
ECA233G0137 Erigeron canadensis HOM05D000459 ORTHO05D002429 1.3e-06 56.6 114 32.5
Eucgr.L01620 Eucalyptus grandis HOM05D000459 ORTHO05D002429 1.3e-06 56.6 122 31.1
Lalb_Chr22g0361341 Lupinus albus HOM05D000459 ORTHO05D002429 1.3e-06 56.6 119 28.6
TPR.G37155 Trifolium pratense HOM05D000459 ORTHO05D002429 1.3e-06 56.6 126 30.2
Zm00001eb257360 Zea mays HOM05D000459 ORTHO05D002429 1.3e-06 56.6 115 33.0
A08p18110 Brassica napus HOM05D000459 ORTHO05D002429 1.6e-06 56.2 131 28.2
Eucgr.F03004 Eucalyptus grandis HOM05D000459 ORTHO05D002429 1.6e-06 56.2 128 28.9
Eucgr.L01668 Eucalyptus grandis HOM05D000459 ORTHO05D002429 1.6e-06 56.2 128 28.1
HanXRQChr05g0139141 Helianthus annuus HOM05D000459 ORTHO05D002429 1.6e-06 56.2 124 29.0
PGR031G0724 Punica granatum HOM05D000459 ORTHO05D002429 1.6e-06 56.2 123 28.5
CANSAT56G0963 Cannabis sativa HOM05D000459 ORTHO05D002429 2.1e-06 55.8 128 31.2
Carub.0001s1536 Capsella rubella HOM05D000459 ORTHO05D017393 2.1e-06 55.8 97 39.2
Dinv38062 Davidia involucrata HOM05D000459 ORTHO05D002429 2.1e-06 55.8 128 29.7
Eucgr.B01618 Eucalyptus grandis HOM05D000459 ORTHO05D002429 2.1e-06 55.8 122 31.1
HanXRQChr17g0539021 Helianthus annuus HOM05D000459 ORTHO05D002429 2.1e-06 55.8 121 31.4
Nitab4.5_0005275g0010 Nicotiana tabacum HOM05D000459 ORTHO05D002429 2.1e-06 55.8 124 28.2
AUR62011610 Chenopodium quinoa HOM05D000459 ORTHO05D002429 2.8e-06 55.5 128 28.9
Duzib168G1422 Durio zibethinus HOM05D000459 ORTHO05D002429 2.8e-06 55.5 124 29.0
Nitab4.5_0001672g0100 Nicotiana tabacum HOM05D000459 ORTHO05D002429 2.8e-06 55.5 124 28.2
Peaxi162Scf00546g00421 Petunia axillaris HOM05D000459 ORTHO05D002429 2.8e-06 55.5 124 27.4
Rhsim12G0196200 Rhododendron simsii HOM05D000459 ORTHO05D002429 2.8e-06 55.5 125 30.4
SHI18613 Sapria himalayana HOM05D000459 ORTHO05D002429 2.8e-06 55.5 127 30.7
Sc08g0007110 Simmondsia chinensis HOM05D000459 ORTHO05D002429 2.8e-06 55.5 126 31.7
vmacro16942 Vaccinium macrocarpon HOM05D000459 ORTHO05D002429 2.8e-06 55.5 145 29.0
Actinidia15707 Actinidia chinensis HOM05D000459 ORTHO05D002429 3.7e-06 55.1 124 29.0
Ca_15700_v3 Cicer arietinum L. HOM05D000459 ORTHO05D002429 3.7e-06 55.1 112 30.4
Cfa013206 Carpinus fangiana HOM05D000459 ORTHO05D002429 4.8e-06 54.7 124 29.8
DCAR_001500 Daucus carota HOM05D000459 ORTHO05D002429 4.8e-06 54.7 127 30.7
Gohir.A09G084200 Gossypium hirsutum HOM05D000459 ORTHO05D002429 4.8e-06 54.7 126 30.2
Lsat_1_v5_gn_3_25641 Lactuca sativa HOM05D000459 ORTHO05D002429 4.8e-06 54.7 124 32.3
Lsat_1_v5_gn_8_94540 Lactuca sativa HOM05D000459 ORTHO05D002429 4.8e-06 54.7 132 28.8
Os05g0179000 Oryza sativa ssp. japonica HOM05D000459 ORTHO05D002429 4.8e-06 54.7 114 35.1
VMungo0647G1737 Vigna mungo HOM05D000459 ORTHO05D002429 4.8e-06 54.7 123 31.7
Zm00001eb122400 Zea mays HOM05D000459 ORTHO05D002429 4.8e-06 54.7 124 32.3
ATR0751G093 Amborella trichopoda HOM05D000459 ORTHO05D006117 6.2e-06 54.3 96 32.3
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 6.2e-06 54.3 97 39.2
Thhalv10009791m.g Eutrema salsugineum HOM05D009689 ORTHO05D012057 6.2e-06 54.3 92 31.5
Gohir.D09G084000 Gossypium hirsutum HOM05D000459 ORTHO05D002429 6.2e-06 54.3 126 28.6
Gorai.006G100000 Gossypium raimondii HOM05D000459 ORTHO05D002429 6.2e-06 54.3 126 28.6
MD15G1115700 Malus domestica HOM05D000459 ORTHO05D002429 6.2e-06 54.3 124 30.6
Sopen12g002900 Solanum pennellii HOM05D000459 ORTHO05D002429 6.2e-06 54.3 124 29.0
Actinidia13286 Actinidia chinensis HOM05D000459 ORTHO05D002429 8.2e-06 53.9 124 29.0
Lalb_Chr24g0402331 Lupinus albus HOM05D000459 ORTHO05D002429 8.2e-06 53.9 126 31.0
Os01g0178700 Oryza sativa ssp. japonica HOM05D000459 ORTHO05D002429 8.2e-06 53.9 120 31.7
SEGI_13881 Sequoiadendron giganteum HOM05D000459 ORTHO05D002429 8.2e-06 53.9 128 29.7
Solyc12g006940.2 Solanum lycopersicum HOM05D000459 ORTHO05D002429 8.2e-06 53.9 124 29.0
PGSC0003DMG400001063 Solanum tuberosum HOM05D000459 ORTHO05D002429 8.2e-06 53.9 124 29.0


User provided reference genes

Program Settings