Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-50 202.6 87 100.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-27 125.9 53 100.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 8.1e-26 120.2 53 94.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 8.1e-26 120.2 53 94.3
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 8.1e-26 120.2 53 94.3
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 8.1e-26 120.2 53 94.3
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.3e-25 118.6 53 92.5
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-25 117.9 53 90.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 4.0e-25 117.9 53 90.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 4.0e-25 117.9 53 90.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.0e-25 117.9 53 90.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.2e-25 117.5 53 92.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.2e-24 116.3 53 92.5
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.0e-24 115.5 53 90.6
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 5.8e-24 114.0 53 90.6
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 5.8e-24 114.0 53 90.6
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.7e-23 112.5 53 88.7
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 6.4e-23 110.5 53 88.7
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 6.4e-23 110.5 53 88.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 8.3e-23 110.2 54 87.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.9e-22 109.0 53 84.9
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.1e-22 107.8 53 86.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 7.8e-21 103.6 49 91.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.7e-20 102.4 53 75.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-18 95.9 52 80.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.4e-17 92.8 53 69.8
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.4e-17 92.0 38 92.1
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.4e-17 92.0 53 67.9
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 3.1e-17 91.7 53 67.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.2e-17 90.9 53 67.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.8e-17 90.5 53 64.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.8e-17 90.5 53 66.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 6.8e-17 90.5 53 66.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-16 89.7 53 66.0
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-16 89.4 53 67.9
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.0e-16 89.0 44 79.5
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 3.4e-16 88.2 53 62.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 3.4e-16 88.2 54 66.7
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.4e-16 87.8 53 66.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.8e-16 87.4 54 63.0
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 7.6e-16 87.0 53 66.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.3e-15 86.3 53 67.9
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.7e-15 85.9 53 64.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.7e-15 85.9 53 66.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.7e-15 85.9 53 66.0
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.2e-15 85.5 51 64.7
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.2e-15 85.5 53 64.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.9e-15 85.1 45 73.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.9e-15 85.1 53 66.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.8e-15 84.7 44 72.7
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.8e-15 84.7 44 72.7
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.8e-15 84.7 53 66.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.8e-15 84.7 53 64.2
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 4.9e-15 84.3 53 60.4
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 4.9e-15 84.3 45 73.3
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.9e-15 84.3 47 70.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 6.4e-15 84.0 42 76.2
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 6.4e-15 84.0 53 58.5
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 8.4e-15 83.6 53 62.3
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 8.4e-15 83.6 53 64.2
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 8.4e-15 83.6 53 60.4
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 8.4e-15 83.6 54 63.0
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.4e-15 83.6 53 62.3
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.1e-14 83.2 53 62.3
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.1e-14 83.2 48 66.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.1e-14 83.2 46 69.6
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.1e-14 83.2 53 58.5
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.1e-14 83.2 53 62.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.1e-14 83.2 44 70.5
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.1e-14 83.2 39 79.5
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.1e-14 83.2 53 62.3
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.4e-14 82.8 44 75.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.4e-14 82.8 53 58.5
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.4e-14 82.8 44 72.7
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.9e-14 82.4 53 62.3
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-14 82.4 52 59.6
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-14 82.4 52 59.6
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-14 82.4 52 59.6
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-14 82.4 52 59.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.4e-14 82.0 53 60.4
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.4e-14 82.0 48 64.6
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.2e-14 81.6 54 63.0
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.2e-14 81.6 39 76.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.2e-14 81.6 40 75.0
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 3.2e-14 81.6 45 66.7
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 4.2e-14 81.3 44 70.5
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.2e-14 81.3 40 75.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 5.4e-14 80.9 44 70.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 5.4e-14 80.9 44 70.5
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 7.1e-14 80.5 40 77.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 7.1e-14 80.5 35 85.7
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 7.1e-14 80.5 53 58.5
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 7.1e-14 80.5 53 58.5
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 7.1e-14 80.5 39 79.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 7.1e-14 80.5 53 58.5
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 7.1e-14 80.5 44 75.0
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 7.1e-14 80.5 44 75.0
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 7.1e-14 80.5 48 66.7
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 7.1e-14 80.5 44 70.5
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 9.2e-14 80.1 44 70.5
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.2e-14 80.1 42 76.2
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 9.2e-14 80.1 42 76.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 9.2e-14 80.1 40 75.0
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 9.2e-14 80.1 40 72.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-13 79.7 39 79.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.2e-13 79.7 44 70.5
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.6e-13 79.3 53 60.4
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.6e-13 79.3 53 60.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.1e-13 79.0 44 70.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.5e-13 78.2 44 68.2
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.5e-13 78.2 44 68.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 4.6e-13 77.8 44 68.2
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.6e-13 77.8 44 63.6
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.6e-13 77.8 44 63.6
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 6.0e-13 77.4 44 68.2
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 6.0e-13 77.4 43 62.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.8e-13 77.0 53 56.6
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.0e-12 76.6 50 54.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.3e-12 76.3 50 60.0
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.3e-12 75.5 44 63.6
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 6.6e-12 73.9 40 65.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.6e-12 73.9 54 55.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 6.6e-12 73.9 54 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.5e-11 72.8 52 53.8
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.5e-11 72.8 53 54.7
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.3e-10 69.7 39 69.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.8e-10 67.8 28 89.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.4e-07 57.4 58 44.8
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.1e-06 56.6 39 53.8
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.4e-06 56.2 38 50.0


User provided reference genes

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