Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25568 Brassica carinata HOM05D013370 ORTHO05D016580 4.3e-71 271.2 133 100.0
C05p14670 Brassica napus HOM05D013370 ORTHO05D016580 1.5e-68 262.7 133 97.7
A06p12400 Brassica napus HOM05D013370 ORTHO05D016580 2.5e-63 245.4 134 93.3
BraA06t24403Z Brassica rapa HOM05D013370 ORTHO05D016580 2.5e-63 245.4 134 93.3
BcaB02g06632 Brassica carinata HOM05D013370 ORTHO05D016580 4.2e-34 148.3 97 79.4
BcaC05g25570 Brassica carinata HOM05D013370 ORTHO05D016580 5.4e-21 104.8 68 75.0
C05p14660 Brassica napus HOM05D013370 ORTHO05D016580 5.4e-21 104.8 68 75.0
BolC5t30187H Brassica oleracea HOM05D013370 ORTHO05D016580 5.4e-21 104.8 68 75.0
BolC5t30188H Brassica oleracea HOM05D013370 ORTHO05D016580 7.0e-21 104.4 51 98.0
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 4.5e-20 101.7 95 52.6
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 1.6e-17 93.2 129 43.4
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 3.7e-14 82.0 132 40.2
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 6.6e-11 71.2 110 42.7
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.8e-09 65.9 116 39.7
BcaC07g38860 Brassica carinata HOM05D014411 ORTHO05D015382 6.1e-09 64.7 101 35.6
C08p18000 Brassica napus HOM05D014411 ORTHO05D015382 6.1e-09 64.7 101 35.6
BolC8t49431H Brassica oleracea HOM05D014411 ORTHO05D015382 6.1e-09 64.7 101 35.6
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 8.0e-09 64.3 91 42.9
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 1.4e-08 63.5 120 33.3
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-08 63.5 93 41.9
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.3e-08 62.8 98 40.8
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 4.0e-08 62.0 113 36.3
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 4.0e-08 62.0 113 36.3
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.2e-07 60.5 96 39.6
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.2e-07 60.5 106 36.8
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 1.5e-07 60.1 88 36.4
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.5e-07 60.1 64 48.4
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 1.5e-07 60.1 87 37.9
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 2.0e-07 59.7 102 39.2
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 2.0e-07 59.7 91 41.8
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 2.0e-07 59.7 91 41.8
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 2.0e-07 59.7 63 49.2
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.6e-07 59.3 120 31.7
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.6e-07 59.3 77 44.2
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 3.4e-07 58.9 103 37.9
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 3.4e-07 58.9 66 47.0
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 4.4e-07 58.5 63 47.6
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 5.8e-07 58.2 66 45.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 5.8e-07 58.2 85 41.2
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 5.8e-07 58.2 75 44.0
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 5.8e-07 58.2 74 43.2
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 7.5e-07 57.8 86 41.9
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 9.8e-07 57.4 66 45.5
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 9.8e-07 57.4 119 34.5
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 9.8e-07 57.4 75 42.7
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 9.8e-07 57.4 87 39.1
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 9.8e-07 57.4 79 45.6
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 9.8e-07 57.4 96 38.5
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 1.3e-06 57.0 66 45.5
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.3e-06 57.0 74 41.9
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.3e-06 57.0 74 43.2
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.3e-06 57.0 66 45.5
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.3e-06 57.0 74 41.9
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.3e-06 57.0 79 40.5
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.7e-06 56.6 74 40.5
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.7e-06 56.6 87 37.9
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.7e-06 56.6 82 41.5
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.7e-06 56.6 111 34.2
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.2e-06 56.2 86 39.5
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 2.2e-06 56.2 98 34.7
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 2.2e-06 56.2 99 39.4
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 2.2e-06 56.2 74 41.9
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 2.2e-06 56.2 64 45.3
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 2.9e-06 55.8 95 36.8
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.9e-06 55.8 70 40.0
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 2.9e-06 55.8 80 38.8
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 2.9e-06 55.8 84 40.5
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 2.9e-06 55.8 74 40.5
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 2.9e-06 55.8 74 40.5
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 2.9e-06 55.8 77 42.9
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 3.7e-06 55.5 100 36.0
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 3.7e-06 55.5 100 36.0
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 3.7e-06 55.5 94 36.2
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.7e-06 55.5 74 40.5
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 3.7e-06 55.5 64 46.9
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 3.7e-06 55.5 71 43.7
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 3.7e-06 55.5 66 45.5
CARHR011770 Cardamine hirsuta HOM05D014411 ORTHO05D015382 4.9e-06 55.1 94 37.2
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 4.9e-06 55.1 101 36.6
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 4.9e-06 55.1 74 43.2
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 4.9e-06 55.1 77 40.3
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 4.9e-06 55.1 79 36.7
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 6.4e-06 54.7 66 45.5
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 6.4e-06 54.7 66 45.5
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 6.4e-06 54.7 120 30.8
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 6.4e-06 54.7 109 32.1
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 6.4e-06 54.7 71 33.8
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 6.4e-06 54.7 66 43.9
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 6.4e-06 54.7 66 43.9
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 6.4e-06 54.7 90 37.8
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 8.3e-06 54.3 82 39.0
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 8.3e-06 54.3 100 38.0
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 8.3e-06 54.3 68 42.6


User provided reference genes

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