Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 5.8e-267 923.7 482 100.0
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 7.6e-259 896.7 486 97.9
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.3e-258 896.0 497 96.4
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.7e-250 869.0 483 93.0
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 5.1e-231 804.3 483 83.2
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.5e-230 802.7 483 86.1
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 7.4e-230 800.4 483 86.7
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 3.6e-224 781.6 483 80.1
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 1.8e-223 779.2 483 84.3
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 5.2e-223 777.7 483 85.7
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.7e-195 685.6 481 72.3
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 7.8e-195 684.1 484 73.3
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 3.1e-183 645.6 483 73.7
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.8e-175 619.8 386 75.9
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 4.4e-174 615.1 394 75.1
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 5.8e-174 614.8 394 74.6
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.9e-173 612.5 393 74.6
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.1e-172 610.5 394 74.9
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.4e-167 592.8 487 61.8
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.0e-166 589.7 389 73.3
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 7.6e-166 587.8 389 73.0
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.3e-165 587.0 383 73.4
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.7e-165 586.6 485 62.5
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 3.8e-165 585.5 384 72.7
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.4e-164 583.6 384 72.4
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 9.2e-164 580.9 387 72.9
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 9.2e-164 580.9 381 72.7
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.6e-163 580.1 381 73.0
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.6e-163 580.1 390 70.8
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 3.5e-163 578.9 394 71.3
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 4.6e-163 578.6 390 72.8
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 4.6e-163 578.6 387 71.6
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 4.6e-163 578.6 381 72.7
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 4.6e-163 578.6 384 72.7
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 7.8e-163 577.8 384 71.4
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 1.3e-162 577.0 487 60.4
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.7e-162 576.6 389 73.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 5.1e-162 575.1 380 73.7
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.7e-162 574.3 380 70.8
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.3e-161 572.4 384 70.6
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 4.3e-161 572.0 384 71.4
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 7.3e-161 571.2 391 72.1
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 7.3e-161 571.2 381 72.7
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 7.3e-161 571.2 384 71.4
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 9.6e-161 570.9 386 71.5
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.2e-160 570.5 384 70.8
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 3.6e-160 568.9 392 68.4
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 3.6e-160 568.9 392 68.4
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.2e-160 568.2 384 72.1
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.4e-159 567.0 392 68.1
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.8e-159 566.6 384 71.6
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 3.1e-159 565.8 404 69.6
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 4.0e-159 565.5 395 70.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 9.0e-159 564.3 395 69.9
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.2e-158 563.9 391 70.6
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.0e-158 563.1 399 68.7
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 2.6e-158 562.8 386 69.4
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 7.6e-158 561.2 381 70.6
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.3e-157 560.5 395 69.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 9.3e-156 554.3 380 69.5
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 3.5e-155 552.4 379 69.9
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 7.8e-155 551.2 400 66.5
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 2.3e-154 549.7 397 68.0
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.1e-153 547.4 380 69.5
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.9e-153 546.6 384 70.3
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 3.3e-153 545.8 384 68.5
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.6e-152 543.5 383 67.4
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 2.1e-152 543.1 386 66.8
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.1e-152 543.1 383 66.8
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 8.1e-152 541.2 380 68.9
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 3.1e-151 539.3 385 68.1
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 5.3e-151 538.5 366 70.5
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.0e-150 536.6 384 66.4
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 3.4e-150 535.8 413 64.2
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.9e-148 530.0 389 66.1
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.4e-148 529.6 396 66.9
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.6e-147 526.9 336 73.5
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 3.5e-147 525.8 413 64.9
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 6.0e-147 525.0 367 67.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 1.3e-146 523.9 405 65.7
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 1.5e-145 520.4 415 64.3
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 2.5e-145 519.6 332 73.5
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 6.2e-144 515.0 441 60.1
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.1e-143 514.2 380 65.5
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 9.0e-143 511.1 332 73.2
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.0e-142 510.0 456 56.8
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 5.8e-142 508.4 366 64.8
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 9.3e-140 501.1 343 71.1
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 5.1e-138 495.4 391 63.2
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 7.6e-134 481.5 366 65.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.9e-133 479.6 317 69.7
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 4.9e-133 478.8 275 97.5
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 4.9e-133 478.8 373 66.2
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.7e-130 468.0 380 60.8
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.9e-124 450.3 345 64.3
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 2.5e-124 449.9 380 59.5
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.6e-123 447.2 376 63.0
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.0e-122 444.5 281 75.4
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.4e-122 444.1 331 64.0
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.1e-119 434.5 398 58.0
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.0e-118 430.3 324 65.7
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 2.2e-112 410.2 393 55.5
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 2.2e-112 410.2 358 55.0
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 3.5e-110 402.9 378 56.9
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.8e-106 390.6 320 66.2
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.2e-100 369.8 380 53.4
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.0e-94 350.5 172 99.4
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.2e-93 347.1 212 75.0
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 3.8e-93 346.3 209 78.9
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.0e-90 336.7 262 63.7
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 5.9e-86 322.4 380 45.8
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 5.7e-81 305.8 360 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 4.5e-78 296.2 347 43.5
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 2.3e-77 293.9 275 58.2
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 8.6e-77 292.0 175 80.6
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 4.1e-71 273.1 279 47.3
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 7.0e-71 272.3 225 60.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 7.1e-63 245.7 182 63.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.5e-60 237.3 175 65.7
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 3.3e-60 236.9 175 65.1
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.7e-59 233.0 175 64.6
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 4.0e-58 229.9 237 56.5
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 2.6e-57 227.3 171 61.4
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 4.0e-50 203.4 296 41.6
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 6.4e-48 196.1 130 74.6
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.2e-43 179.5 157 59.9
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 3.6e-35 153.7 88 80.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.4e-33 147.1 75 93.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.4e-26 125.2 143 49.7
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.2e-25 122.1 233 36.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 3.4e-25 120.6 67 86.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.1e-23 115.5 282 34.4
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 8.2e-19 99.4 103 49.5
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-17 95.5 130 40.8
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.8e-16 90.5 55 76.4
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 3.8e-16 90.5 71 64.8
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 4.8e-11 73.6 63 57.1
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 3.1e-10 70.9 38 76.3
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 1.5e-09 68.6 96 39.6
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 1.7e-08 65.1 39 69.2
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 5.0e-08 63.5 32 93.8
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 6.5e-08 63.2 77 42.9


User provided reference genes

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