Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 4.2e-87 324.7 170 100.0
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 1.9e-55 219.5 122 98.4
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 3.3e-55 218.8 122 97.5
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 2.8e-54 215.7 122 96.7
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 7.5e-52 207.6 121 91.7
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.4e-50 203.4 122 91.8
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.8e-50 203.0 122 90.2
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 3.2e-50 202.2 122 89.3
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 7.0e-50 201.1 122 91.8
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 1.8e-45 186.4 122 86.9
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 6.8e-45 184.5 122 86.1
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 8.9e-45 184.1 123 84.6
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 2.6e-44 182.6 123 85.4
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 9.8e-44 180.6 122 85.2
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 3.7e-43 178.7 125 84.0
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 4.9e-43 178.3 125 84.0
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 4.9e-43 178.3 125 84.0
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 6.4e-43 177.9 125 84.0
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.3e-40 170.2 124 77.4
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 6.4e-35 151.4 125 68.8
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 1.3e-27 127.1 82 86.6
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 1.9e-26 123.2 123 59.3
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 5.4e-26 121.7 123 58.5
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 2.1e-25 119.8 123 58.5
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 6.0e-25 118.2 131 55.7
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 7.8e-25 117.9 130 54.6
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 3.0e-24 115.9 123 56.1
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 3.3e-23 112.5 118 57.6
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 4.3e-23 112.1 132 50.0
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 9.6e-23 110.9 119 55.5
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 1.6e-22 110.2 117 56.4
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 2.1e-22 109.8 119 54.6
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 2.8e-22 109.4 123 50.4
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 4.7e-22 108.6 124 52.4
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.0e-21 105.5 140 46.4
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.0e-21 105.5 139 46.0
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 6.9e-21 104.8 120 52.5
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 6.9e-21 104.8 106 57.5
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 1.5e-20 103.6 119 51.3
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 2.0e-20 103.2 99 58.6
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 2.6e-20 102.8 121 50.4
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 2.6e-20 102.8 123 50.4
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 4.4e-20 102.1 123 50.4
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.8e-20 101.7 159 42.1
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 7.6e-20 101.3 159 41.5
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 7.6e-20 101.3 159 41.5
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 7.6e-20 101.3 159 41.5
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.3e-19 100.5 125 48.0
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.3e-19 100.5 125 48.0
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 3.8e-19 99.0 110 51.8
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 3.8e-19 99.0 133 48.1
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 3.8e-19 99.0 103 56.3
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 6.4e-19 98.2 123 45.5
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 1.1e-18 97.4 139 45.3
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 1.1e-18 97.4 108 49.1
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 1.4e-18 97.1 133 48.9
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 2.4e-18 96.3 91 54.9
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 3.2e-18 95.9 139 43.2
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 9.3e-18 94.4 114 50.0
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 1.6e-17 93.6 127 46.5
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 4.6e-17 92.0 131 42.7
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 4.6e-17 92.0 125 40.8
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 1.0e-16 90.9 121 42.1
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 1.0e-16 90.9 133 42.9
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.0e-16 90.9 126 42.9
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 1.0e-16 90.9 122 45.9
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 1.3e-16 90.5 111 41.4
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 1.7e-16 90.1 120 45.8
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 1.7e-16 90.1 135 39.3
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 3.0e-16 89.4 125 40.8
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 3.9e-16 89.0 78 61.5
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 5.1e-16 88.6 103 52.4
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 5.1e-16 88.6 104 48.1
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 5.1e-16 88.6 139 43.2
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 8.7e-16 87.8 110 41.8
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 8.7e-16 87.8 137 38.7
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 8.7e-16 87.8 134 37.3
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.1e-15 87.4 128 41.4
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.5e-15 87.0 116 44.0
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 2.5e-15 86.3 125 38.4
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 4.3e-15 85.5 135 37.0
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 4.3e-15 85.5 135 37.8
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 1.6e-14 83.6 124 40.3
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 3.6e-14 82.4 138 37.0
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 3.6e-14 82.4 138 37.0
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 8.1e-14 81.3 112 38.4
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.4e-13 80.5 113 40.7
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 1.8e-13 80.1 124 37.9
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.2e-12 77.4 106 43.4
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 1.5e-12 77.0 92 50.0
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 1.7e-11 73.6 108 36.1
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 2.2e-11 73.2 98 39.8
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 2.2e-11 73.2 118 39.0
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 8.4e-11 71.2 96 38.5
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 1.9e-10 70.1 90 34.4
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 3.2e-10 69.3 76 50.0
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 1.2e-09 67.4 108 36.1
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 1.2e-09 67.4 105 31.4
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 1.2e-09 67.4 114 33.3
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 2.7e-09 66.2 105 40.0
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 5.1e-08 62.0 120 35.0
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 5.6e-07 58.5 41 68.3
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 5.6e-07 58.5 103 37.9
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 7.4e-07 58.2 75 46.7


User provided reference genes

Program Settings