Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 6.9e-128 460.7 238 100.0
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 4.8e-105 384.8 260 78.1
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 1.7e-102 376.3 280 75.0
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 8.5e-102 374.0 278 70.9
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 8.5e-102 374.0 278 70.5
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 3.6e-100 368.6 279 71.0
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 4.7e-100 368.2 217 91.2
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 6.1e-100 367.9 278 70.5
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 3.9e-99 365.2 278 71.6
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 3.7e-97 358.6 243 81.9
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 3.7e-97 358.6 243 81.9
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 5.9e-95 351.3 244 78.7
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 7.7e-95 350.9 239 77.8
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 9.4e-93 344.0 324 59.9
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 2.2e-86 322.8 270 69.6
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.2e-71 273.9 268 56.0
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.0e-70 270.8 268 55.6
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.6e-70 268.1 268 55.6
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.9e-69 266.5 268 55.2
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 3.3e-69 265.8 276 54.3
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 4.2e-69 265.4 273 54.2
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 5.5e-69 265.0 274 54.4
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 5.5e-69 265.0 272 52.9
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 1.2e-68 263.8 269 54.6
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 1.6e-68 263.5 273 53.8
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 2.8e-68 262.7 282 54.6
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 1.0e-67 260.8 279 54.8
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 1.4e-67 260.4 279 54.8
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 1.8e-67 260.0 279 55.6
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 2.3e-67 259.6 273 57.9
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 4.0e-67 258.8 284 53.5
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 5.2e-67 258.5 286 53.1
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 1.5e-66 256.9 267 54.3
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.6e-66 256.1 273 53.8
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 3.4e-66 255.8 286 53.5
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 4.4e-66 255.4 286 52.8
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 1.7e-65 253.4 270 53.7
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 1.7e-65 253.4 273 56.0
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 2.2e-65 253.1 286 52.4
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 3.7e-65 252.3 281 50.9
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 6.3e-65 251.5 272 53.3
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 8.3e-65 251.1 268 52.6
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 1.8e-64 250.0 264 53.8
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 2.4e-64 249.6 275 54.2
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 3.1e-64 249.2 273 54.6
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 3.1e-64 249.2 273 54.6
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 4.1e-64 248.8 297 49.5
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 9.2e-64 247.7 289 50.9
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 5.9e-63 245.0 273 55.3
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 7.8e-63 244.6 282 51.4
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 2.9e-62 242.7 284 51.4
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 2.9e-62 242.7 276 51.1
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 1.9e-61 240.0 281 49.8
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 2.5e-61 239.6 271 50.9
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 7.3e-61 238.0 274 55.8
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 3.6e-60 235.7 273 51.6
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 6.1e-60 235.0 284 48.9
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 8.9e-59 231.1 276 50.0
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 1.2e-58 230.7 275 48.4
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 5.8e-58 228.4 269 48.7
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.5e-58 228.0 268 50.7
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 9.8e-58 227.6 278 48.6
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.9e-57 226.1 268 50.0
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 8.3e-57 224.6 295 46.8
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 1.9e-56 223.4 269 50.9
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 4.6e-55 218.8 270 52.2
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 1.3e-54 217.2 287 49.1
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 5.0e-54 215.3 219 60.3
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 6.6e-54 214.9 265 49.4
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 3.3e-53 212.6 269 47.2
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 3.6e-52 209.1 281 45.2
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-51 207.6 246 50.0
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 5.2e-51 205.3 266 51.1
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 1.2e-50 204.1 224 49.1
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 2.0e-50 203.4 236 50.0
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 2.6e-50 203.0 287 48.1
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.4e-50 202.6 249 49.8
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 3.4e-50 202.6 217 51.2
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 5.8e-50 201.8 206 52.4
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 8.3e-49 198.0 215 51.2
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-48 197.2 248 48.4
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 4.1e-48 195.7 211 51.2
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.6e-47 192.2 269 44.6
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 7.8e-47 191.4 213 50.7
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 7.8e-47 191.4 314 42.0
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 7.8e-47 191.4 242 51.2
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.2e-44 184.1 174 54.0
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.8e-44 183.0 220 49.5
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 8.1e-44 181.4 173 55.5
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.8e-43 180.3 169 56.8
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 2.0e-42 176.8 177 53.7
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 7.5e-42 174.9 226 45.1
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 9.9e-42 174.5 220 46.8
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 1.1e-37 161.0 179 48.6
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-37 161.0 170 55.3
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 4.3e-37 159.1 123 65.0
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.2e-36 155.2 242 43.0
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 7.8e-31 138.3 232 39.7
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 3.3e-29 132.9 251 40.6
BcaC05g25535 Brassica carinata HOM05D007396 ORTHO05D009228 2.2e-25 120.2 89 75.3
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 1.4e-24 117.5 226 35.0
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 8.7e-22 108.2 191 38.2
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 3.6e-20 102.8 129 45.7
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 2.3e-14 83.6 79 62.0
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 5.8e-10 68.9 99 40.4
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 5.1e-06 55.8 36 63.9
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 8.7e-06 55.1 75 45.3


User provided reference genes

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