Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25535 Brassica carinata HOM05D007396 ORTHO05D009228 1.5e-46 189.1 90 100.0
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 2.9e-26 121.7 89 75.3
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 2.8e-21 105.1 102 57.8
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 3.2e-17 91.7 103 52.4
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 7.1e-17 90.5 102 52.9
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 1.2e-16 89.7 102 50.0
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 7.8e-16 87.0 47 93.6
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 1.3e-15 86.3 102 51.0
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 2.3e-15 85.5 102 49.0
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 3.0e-15 85.1 102 49.0
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 3.9e-15 84.7 102 50.0
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 5.1e-15 84.3 47 91.5
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 1.1e-14 83.2 47 89.4
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 1.1e-14 83.2 47 89.4
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.1e-14 83.2 47 89.4
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 6.4e-10 67.4 97 45.4
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 3.2e-09 65.1 79 50.6
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 7.1e-09 63.9 102 40.2
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 4.6e-08 61.2 102 39.2
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.3e-07 59.7 102 39.2
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 1.7e-07 59.3 102 39.2
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.7e-07 59.3 102 37.3
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 2.3e-07 58.9 102 38.2
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 3.0e-07 58.5 104 40.4
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 3.0e-07 58.5 104 40.4
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.9e-07 58.2 102 37.3
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.9e-07 58.2 102 37.3
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.9e-07 58.2 103 39.8
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 3.9e-07 58.2 104 40.4
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.1e-07 57.8 102 37.3
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 5.1e-07 57.8 102 35.3
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 1.5e-06 56.2 103 38.8
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 1.5e-06 56.2 103 38.8
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 1.5e-06 56.2 103 38.8
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 1.9e-06 55.8 103 38.8
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 2.5e-06 55.5 106 37.7
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 2.5e-06 55.5 103 37.9
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 3.3e-06 55.1 104 38.5
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 5.6e-06 54.3 103 38.8
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 7.3e-06 53.9 103 35.0
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 7.3e-06 53.9 103 35.9


User provided reference genes

Program Settings