Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 4.2e-256 887.5 437 100.0
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.3e-249 865.9 431 98.6
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.9e-249 864.8 431 98.6
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.5e-245 852.4 431 97.2
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 3.7e-244 847.8 431 96.8
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.9e-238 827.8 435 93.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 5.1e-238 827.4 436 93.1
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 6.7e-238 827.0 436 93.6
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.0e-237 825.5 436 92.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.7e-236 822.4 435 92.6
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 2.8e-236 821.6 434 93.1
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 2.8e-236 821.6 434 93.1
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.4e-235 819.3 436 92.4
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 4.5e-234 814.3 431 93.5
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 6.5e-233 810.4 431 92.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.8e-230 802.4 429 90.9
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.7e-213 744.2 433 82.9
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 9.2e-187 657.1 441 73.2
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.5e-186 655.2 447 72.5
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 7.8e-186 654.1 444 73.9
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.3e-185 653.3 444 72.5
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.6e-185 650.6 444 72.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.1e-182 643.7 445 72.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.1e-182 642.1 444 71.6
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.2e-182 641.3 441 72.6
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.9e-182 640.6 435 72.9
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.5e-181 639.8 445 71.7
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.0e-181 639.4 444 71.2
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.4e-181 638.3 428 77.6
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.4e-181 638.3 445 71.2
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.8e-181 637.9 440 73.0
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.8e-181 637.9 447 71.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.7e-180 636.3 445 71.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.2e-180 636.0 447 70.5
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.9e-180 635.6 433 72.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 4.9e-180 634.8 447 70.7
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 4.1e-179 631.7 439 71.3
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 9.2e-179 630.6 440 71.8
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 3.5e-178 628.6 437 71.2
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 3.5e-178 628.6 447 69.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 6.0e-178 627.9 443 70.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 7.8e-178 627.5 443 71.1
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.0e-177 627.1 443 70.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.0e-177 627.1 447 69.8
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.7e-177 626.3 439 72.2
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.7e-177 626.3 442 70.8
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 5.1e-177 624.8 442 69.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.5e-176 623.2 443 71.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 9.5e-176 620.5 446 68.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 9.5e-176 620.5 443 71.3
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.1e-175 619.4 447 69.1
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.7e-175 618.2 443 70.7
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.7e-175 618.2 440 69.8
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.0e-174 615.1 440 70.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.8e-174 614.4 444 68.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.8e-174 614.4 440 69.5
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.0e-173 612.8 440 68.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.4e-173 612.1 443 68.6
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 9.9e-173 610.5 441 69.4
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 9.9e-173 610.5 447 69.4
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.3e-172 610.1 434 71.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.9e-172 609.0 443 68.8
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.8e-172 608.6 447 68.7
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.9e-172 608.2 447 67.8
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 8.4e-172 607.4 440 68.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.1e-171 607.1 440 66.8
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.1e-171 607.1 445 68.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.9e-171 606.3 444 66.4
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.4e-171 605.9 441 67.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.2e-171 605.5 439 68.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 4.2e-171 605.1 440 69.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 9.2e-171 604.0 447 68.2
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.2e-170 603.6 441 68.3
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 4.6e-170 601.7 447 67.6
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 6.0e-170 601.3 447 67.6
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.0e-169 600.5 447 67.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.3e-169 600.1 440 68.2
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.1e-168 597.0 449 67.5
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.1e-168 597.0 429 71.6
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.2e-167 593.6 441 67.1
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.1e-166 590.5 440 68.2
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.5e-165 586.6 433 65.6
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.6e-165 585.9 410 69.5
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.6e-165 585.9 424 69.1
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 5.8e-165 584.7 442 66.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 7.6e-165 584.3 444 66.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 3.2e-163 578.9 440 66.8
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 5.4e-163 578.2 440 68.0
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.7e-162 575.9 440 68.0
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 6.0e-162 574.7 449 65.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 6.0e-162 574.7 397 72.0
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.7e-161 573.2 444 64.6
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.6e-161 571.2 444 64.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.8e-159 565.8 405 70.4
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.8e-158 563.1 471 59.9
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.9e-158 561.2 443 65.2
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 9.0e-158 560.8 440 66.1
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.8e-156 555.4 437 63.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 8.4e-156 554.3 440 64.1
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.1e-154 549.7 486 56.8
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 6.7e-153 544.7 437 61.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-152 543.9 404 66.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.5e-152 543.5 368 72.0
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 5.6e-152 541.6 442 63.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.3e-151 540.4 397 68.5
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.4e-150 536.2 439 64.0
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.0e-148 530.8 447 62.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.2e-143 511.1 360 68.9
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-140 503.1 350 70.3
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.4e-139 500.4 487 53.2
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 4.6e-138 495.4 452 55.8
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.3e-137 493.0 466 55.6
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.3e-137 493.0 439 61.7
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.1e-136 490.7 441 61.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.3e-135 487.3 428 57.9
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.4e-134 483.8 357 68.6
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.1e-122 443.4 513 47.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.1e-122 441.8 433 51.3
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.2e-119 431.4 432 53.2
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.3e-105 386.7 437 50.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.8e-102 377.1 304 62.5
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.0e-100 369.0 326 62.0
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 5.2e-97 359.0 229 77.7
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 8.9e-89 331.6 381 46.7
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 3.5e-85 319.7 241 66.8
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.3e-79 301.2 435 40.9
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-78 298.1 282 60.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.8e-74 283.5 203 67.5
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.5e-72 277.7 178 79.8
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 3.6e-66 256.5 394 37.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.6e-64 250.4 271 48.0
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.3e-60 238.0 242 54.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.1e-60 236.1 248 54.8
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.1e-59 235.0 429 38.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 8.9e-57 225.3 420 36.7
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.5e-51 207.2 195 58.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 4.8e-50 203.0 233 49.8
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.9e-47 193.0 112 77.7
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.2e-46 189.9 292 42.1
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.4e-46 189.5 112 75.9
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-45 187.6 112 75.0
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.9e-44 183.3 205 48.8
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.2e-42 176.0 174 55.7
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.9e-39 167.2 195 46.7
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.9e-39 166.4 107 72.9
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-36 158.7 112 66.1
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 9.0e-33 145.6 119 59.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.5e-30 137.5 146 52.7
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.5e-29 133.7 104 60.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.9e-28 130.2 204 42.2
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-27 126.7 67 91.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 5.5e-22 109.8 125 52.0
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 7.2e-22 109.4 131 47.3
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.6e-16 90.9 78 64.1
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.3e-12 77.8 57 71.9
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.4e-06 58.5 58 55.2


User provided reference genes

Program Settings