Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 1.6e-152 542.7 277 100.0
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 2.9e-138 495.4 282 91.5
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 3.0e-135 485.3 284 90.5
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 5.7e-134 481.1 285 90.2
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 3.7e-125 451.8 287 84.3
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 1.8e-124 449.5 270 87.8
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 8.9e-119 430.6 290 81.4
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 7.0e-116 421.0 284 80.6
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 9.2e-116 420.6 287 78.0
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 2.3e-114 416.0 290 79.3
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 1.9e-113 412.9 290 78.3
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 5.4e-92 341.7 280 66.1
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 7.4e-81 304.7 183 89.1
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 7.1e-68 261.5 250 61.2
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 7.1e-68 261.5 250 61.2
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 1.2e-67 260.8 250 61.2
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 1.6e-67 260.4 139 93.5
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 2.1e-67 260.0 131 96.2
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 2.7e-67 259.6 250 60.8
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 3.5e-67 259.2 250 61.2
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 1.0e-66 257.7 250 61.2
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 1.5e-65 253.8 250 60.4
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 1.5e-65 253.8 250 60.4
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 2.8e-64 249.6 266 52.3
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 2.7e-59 233.0 243 51.9
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 5.7e-57 225.3 233 53.6
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 1.6e-56 223.8 221 54.3
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 2.2e-56 223.4 246 50.8
C03p75300 Brassica napus HOM05D002526 ORTHO05D010157 8.2e-56 221.5 250 55.6
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 1.4e-55 220.7 247 49.8
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 2.4e-55 219.9 235 51.9
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 2.4e-55 219.9 255 48.6
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 4.1e-55 219.2 284 46.5
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 4.1e-55 219.2 270 46.3
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 6.9e-55 218.4 231 52.8
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 6.9e-55 218.4 247 49.4
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 1.5e-54 217.2 256 48.4
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 1.5e-54 217.2 247 49.4
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 2.0e-54 216.9 239 49.0
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 4.5e-54 215.7 238 49.2
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 5.9e-54 215.3 254 48.4
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 5.9e-54 215.3 254 48.4
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 7.7e-54 214.9 239 48.5
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 7.7e-54 214.9 239 48.5
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 1.3e-53 214.2 243 50.2
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 2.9e-53 213.0 244 49.2
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 3.8e-53 212.6 258 46.5
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 2.5e-52 209.9 216 53.2
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 5.5e-52 208.8 215 53.0
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 2.7e-51 206.5 226 50.4
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 3.6e-51 206.1 224 51.8
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.0e-50 204.5 282 43.6
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 2.3e-50 203.4 241 50.2
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 1.7e-48 197.2 222 48.6
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 1.4e-47 194.1 229 47.6
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 2.4e-47 193.4 208 49.5
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 3.1e-47 193.0 241 45.6
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 6.9e-47 191.8 229 48.0
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 9.1e-47 191.4 229 46.7
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 2.6e-46 189.9 243 44.4
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 7.7e-46 188.3 202 53.5
BolC3t19789H Brassica oleracea HOM05D002526 ORTHO05D010157 1.0e-45 188.0 101 94.1
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 1.7e-45 187.2 227 49.3
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 3.8e-45 186.0 211 49.3
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 5.0e-45 185.7 232 50.0
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 5.0e-45 185.7 220 45.9
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 1.4e-44 184.1 213 50.7
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.1e-43 180.3 242 45.9
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 2.7e-43 179.9 240 44.6
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 5.2e-42 175.6 248 46.0
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 1.1e-41 174.5 226 44.7
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 5.7e-41 172.2 177 52.5
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 2.8e-40 169.9 238 43.3
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.7e-37 160.6 193 46.1
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 2.2e-37 160.2 238 40.3
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 3.8e-37 159.5 194 47.9
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 3.2e-36 156.4 231 42.4
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 3.6e-35 152.9 221 44.8
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 3.6e-35 152.9 248 40.3
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 4.4e-33 146.0 207 42.5
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 1.4e-31 141.0 180 45.6
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 3.1e-31 139.8 182 45.6
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 2.6e-25 120.2 202 36.1
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 2.1e-19 100.5 106 52.8
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.4e-15 87.8 201 29.4
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 3.1e-15 86.7 206 27.2
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 2.6e-09 67.0 209 24.9
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 2.6e-09 67.0 189 30.7
COL.COLO4_17538 Corchorus olitorius HOM05D000828 ORTHO05D000623 7.0e-07 58.9 198 27.8
AUR62000548 Chenopodium quinoa HOM05D000828 ORTHO05D000623 2.0e-06 57.4 265 22.6


User provided reference genes

Program Settings