Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 3.1e-50 201.4 97 100.0
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.2e-43 179.5 131 72.5
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.3e-40 169.5 123 72.4
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.7e-40 169.1 123 74.0
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 1.9e-39 165.6 123 70.7
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 3.5e-38 161.4 123 69.9
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.7e-37 159.1 122 68.0
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 2.3e-37 158.7 123 66.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 5.1e-37 157.5 123 68.3
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 6.6e-37 157.1 123 68.3
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 1.1e-36 156.4 123 65.9
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 2.5e-36 155.2 122 66.4
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 4.3e-36 154.5 136 63.2
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 8.1e-35 150.2 123 63.4
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 1.4e-34 149.4 140 60.0
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 7.1e-31 137.1 106 67.9
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 9.3e-31 136.7 123 57.7
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.2e-30 136.3 123 58.5
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 4.6e-30 134.4 123 56.9
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 6.0e-30 134.0 123 56.9
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 6.0e-30 134.0 121 57.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 7.9e-30 133.7 121 57.9
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 7.9e-30 133.7 123 56.1
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 7.9e-30 133.7 123 56.1
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 7.9e-30 133.7 123 56.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.0e-29 133.3 115 60.9
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 1.0e-29 133.3 123 57.7
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 1.3e-29 132.9 123 53.7
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 1.3e-29 132.9 123 57.7
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.8e-29 132.5 126 56.3
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 2.3e-29 132.1 123 56.1
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 3.0e-29 131.7 123 53.7
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 3.9e-29 131.3 123 53.7
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.9e-29 131.3 126 56.3
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 3.9e-29 131.3 121 57.0
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 5.1e-29 131.0 123 55.3
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 5.1e-29 131.0 123 53.7
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 6.7e-29 130.6 121 53.7
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 8.7e-29 130.2 106 66.0
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.1e-28 129.8 126 55.6
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.1e-28 129.8 117 56.4
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.1e-28 129.8 123 52.8
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.9e-28 129.0 123 54.5
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.9e-28 129.0 117 54.7
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.5e-28 128.6 122 54.9
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 3.3e-28 128.3 120 55.0
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 3.3e-28 128.3 122 54.1
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 4.3e-28 127.9 123 55.3
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 4.3e-28 127.9 123 55.3
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 5.6e-28 127.5 122 53.3
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 5.6e-28 127.5 123 52.8
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 7.4e-28 127.1 123 53.7
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.4e-28 127.1 115 56.5
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.4e-28 127.1 115 56.5
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.4e-28 127.1 115 56.5
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 7.4e-28 127.1 115 56.5
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 9.6e-28 126.7 105 63.8
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 9.6e-28 126.7 123 54.5
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.3e-27 126.3 123 52.0
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 1.3e-27 126.3 123 53.7
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 1.3e-27 126.3 123 53.7
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.6e-27 125.9 122 53.3
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.6e-27 125.9 123 52.8
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 2.1e-27 125.6 123 52.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 2.1e-27 125.6 123 52.8
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.7e-27 124.8 120 52.5
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 4.8e-27 124.4 122 53.3
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 4.8e-27 124.4 115 55.7
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.8e-27 124.4 115 55.7
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.8e-27 124.4 115 55.7
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 4.8e-27 124.4 123 52.0
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.1e-26 123.2 122 52.5
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 1.4e-26 122.9 123 53.7
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.4e-26 122.9 118 55.1
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 1.8e-26 122.5 116 55.2
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 1.8e-26 122.5 119 51.3
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.8e-26 122.5 119 51.3
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.4e-26 122.1 123 49.6
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.4e-26 122.1 123 52.0
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 2.4e-26 122.1 123 52.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 3.1e-26 121.7 123 52.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 5.3e-26 120.9 116 53.4
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 6.9e-26 120.6 115 55.7
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 1.2e-25 119.8 121 51.2
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.5e-25 119.4 123 50.4
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 3.4e-25 118.2 116 52.6
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 4.5e-25 117.9 121 49.6
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 4.5e-25 117.9 123 50.4
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.7e-24 115.9 116 51.7
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 2.9e-24 115.2 123 48.0
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 3.8e-24 114.8 121 49.6
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 6.4e-24 114.0 123 48.0
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 8.4e-24 113.6 116 51.7
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 8.4e-24 113.6 122 50.8
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 8.4e-24 113.6 122 50.8
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.1e-23 113.2 121 48.8
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.4e-23 112.8 123 47.2
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.2e-22 109.8 120 47.5
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 2.1e-22 109.0 105 52.4
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 6.0e-22 107.5 109 51.4
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 6.0e-22 107.5 116 52.6
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.8e-21 105.9 73 69.9
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.7e-21 103.6 106 49.1
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.7e-21 103.6 106 49.1
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.1e-20 103.2 106 50.9
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.1e-20 103.2 112 47.3
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.1e-20 103.2 106 49.1
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.9e-20 102.4 106 50.0
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.5e-20 102.1 105 50.5
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 3.3e-20 101.7 109 50.5
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.3e-19 99.8 99 51.5
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.8e-19 98.6 106 46.2
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 2.8e-19 98.6 99 50.5
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 3.7e-19 98.2 106 46.2
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 6.2e-19 97.4 104 46.2
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.1e-18 96.7 120 43.3
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.4e-18 96.3 113 46.0
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.8e-18 95.9 107 46.7
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 5.3e-18 94.4 98 52.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.2e-17 93.2 104 46.2
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 5.8e-17 90.9 53 67.9
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 2.9e-16 88.6 111 41.4
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 2.3e-13 79.0 39 89.7
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 2.3e-13 79.0 39 89.7
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 2.3e-13 79.0 39 89.7
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 2.5e-12 75.5 56 60.7
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 9.7e-12 73.6 39 76.9
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 3.7e-11 71.6 105 40.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.4e-10 69.7 40 67.5
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 8.5e-08 60.5 97 36.1
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 1.6e-06 56.2 41 61.0
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 2.1e-06 55.8 38 55.3
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.7e-06 55.5 38 52.6


User provided reference genes

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