Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25426 Brassica carinata HOM05D000197 ORTHO05D000114 9.5e-74 280.0 135 100.0
BolC5t30047H Brassica oleracea HOM05D000197 ORTHO05D000114 1.3e-59 233.0 129 88.4
C05p13020 Brassica napus HOM05D000197 ORTHO05D000114 9.5e-42 173.7 87 93.1
BcaC07g41521 Brassica carinata HOM05D000197 ORTHO05D000114 4.9e-38 161.4 114 71.9
BolC8t52078H Brassica oleracea HOM05D000197 ORTHO05D000114 4.9e-38 161.4 114 71.9
CARHR015480 Cardamine hirsuta HOM05D000197 ORTHO05D000114 3.5e-36 155.2 115 67.8
AL1G27010 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 3.3e-34 148.7 115 64.3
C08p45300 Brassica napus HOM05D000197 ORTHO05D000114 5.6e-34 147.9 126 62.7
Carub.0001s1472 Capsella rubella HOM05D000197 ORTHO05D000114 5.6e-34 147.9 116 62.1
AT1G14950 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 7.3e-34 147.5 115 63.5
Aa31LG2G8390 Aethionema arabicum HOM05D000197 ORTHO05D000114 6.9e-32 141.0 115 60.9
Aa31LG2G8380 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.2e-31 140.2 115 61.7
BcaC09g50956 Brassica carinata HOM05D000197 ORTHO05D000114 3.4e-31 138.7 115 58.3
C01p18830 Brassica napus HOM05D000197 ORTHO05D000114 3.4e-31 138.7 115 58.3
BolC1t01810H Brassica oleracea HOM05D000197 ORTHO05D000114 3.4e-31 138.7 115 58.3
Thhalv10026372m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 3.4e-31 138.7 115 60.0
CARHR231040 Cardamine hirsuta HOM05D000197 ORTHO05D000114 2.2e-30 136.0 114 58.8
CARHR231050 Cardamine hirsuta HOM05D000197 ORTHO05D000114 2.2e-30 136.0 115 56.5
AL7G29680 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 2.9e-30 135.6 115 57.4
BcaNung01075 Brassica carinata HOM05D000197 ORTHO05D000114 2.9e-30 135.6 115 56.5
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 6.4e-30 134.4 115 55.7
A01p14970 Brassica napus HOM05D000197 ORTHO05D000114 6.4e-30 134.4 115 55.7
C01p18770 Brassica napus HOM05D000197 ORTHO05D000114 6.4e-30 134.4 115 55.7
BolC1t01807H Brassica oleracea HOM05D000197 ORTHO05D000114 6.4e-30 134.4 115 55.7
BraA01t01438Z Brassica rapa HOM05D000197 ORTHO05D000114 6.4e-30 134.4 115 55.7
BcaC06g34157 Brassica carinata HOM05D000197 ORTHO05D000114 1.1e-29 133.7 115 60.0
C07p32090 Brassica napus HOM05D000197 ORTHO05D000114 1.1e-29 133.7 115 60.0
A08p21960 Brassica napus HOM05D000197 ORTHO05D000114 1.4e-29 133.3 115 56.5
C03p80480 Brassica napus HOM05D000197 ORTHO05D000114 1.4e-29 133.3 115 56.5
BolC3t20294H Brassica oleracea HOM05D000197 ORTHO05D000114 1.4e-29 133.3 115 56.5
THA.LOC104823801 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 1.4e-29 133.3 115 60.0
AL1G26980 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 1.9e-29 132.9 116 55.2
AT1G14930 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 3.2e-29 132.1 115 55.7
Carub.0005s0049 Capsella rubella HOM05D000197 ORTHO05D000114 3.2e-29 132.1 115 58.3
Sp7g21600 Schrenkiella parvula HOM05D000197 ORTHO05D000114 3.2e-29 132.1 115 55.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.2e-29 131.7 115 55.7
BolC7t43748H Brassica oleracea HOM05D000197 ORTHO05D000114 4.2e-29 131.7 115 59.1
Thhalv10026489m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 4.2e-29 131.7 115 53.0
BraA08t34148Z Brassica rapa HOM05D000197 ORTHO05D000114 5.4e-29 131.3 115 55.7
BcaC06g31295 Brassica carinata HOM05D000949 ORTHO05D000114 9.3e-29 130.6 115 59.1
A06p44360 Brassica napus HOM05D000197 ORTHO05D000114 9.3e-29 130.6 115 58.3
BraA06t27311Z Brassica rapa HOM05D000197 ORTHO05D000114 9.3e-29 130.6 115 58.3
AT1G14940 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.2e-28 130.2 115 55.7
A01p41970 Brassica napus HOM05D000197 ORTHO05D000114 1.2e-28 130.2 115 57.4
AL1G27000 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 1.6e-28 129.8 114 55.3
AL5G10520 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 1.6e-28 129.8 115 57.4
BcaB07g30738 Brassica carinata HOM05D000197 ORTHO05D000114 1.6e-28 129.8 115 58.3
BcaNung01076 Brassica carinata HOM05D000197 ORTHO05D000114 1.6e-28 129.8 115 55.7
AL5G13150 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 2.1e-28 129.4 115 56.5
AT2G01520 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 2.1e-28 129.4 115 56.5
Thhalv10005071m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 2.7e-28 129.0 115 57.4
Aa31LG2G8370 Aethionema arabicum HOM05D000197 ORTHO05D000114 4.6e-28 128.3 116 55.2
Carub.0007s1744 Capsella rubella HOM05D000197 ORTHO05D000114 4.6e-28 128.3 115 55.7
Thhalv10005073m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 4.6e-28 128.3 115 57.4
BcaC09g48106 Brassica carinata HOM05D000197 ORTHO05D000114 6.0e-28 127.9 114 54.4
Thhalv10005076m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 6.0e-28 127.9 115 57.4
CARHR015470 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.0e-27 127.1 115 53.9
BraA01t04264Z Brassica rapa HOM05D000197 ORTHO05D000114 1.3e-27 126.7 115 56.5
CARHR144080 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.3e-27 126.7 115 55.7
AT4G23670 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.7e-27 126.3 115 52.2
AT4G23680 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.7e-27 126.3 115 53.9
CARHR231070 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.7e-27 126.3 115 57.4
BcaC09g48107 Brassica carinata HOM05D000197 ORTHO05D000114 2.3e-27 125.9 116 52.6
A01p41980 Brassica napus HOM05D000197 ORTHO05D000114 2.3e-27 125.9 116 52.6
BolC1t05414H Brassica oleracea HOM05D000197 ORTHO05D000114 2.3e-27 125.9 116 52.6
BraA01t04266Z Brassica rapa HOM05D000197 ORTHO05D000114 2.3e-27 125.9 116 52.6
BolC1t05413H Brassica oleracea HOM05D000197 ORTHO05D000114 3.0e-27 125.6 108 55.6
AL7G42370 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 6.6e-27 124.4 115 55.7
A03p54650 Brassica napus HOM05D000197 ORTHO05D000114 6.6e-27 124.4 122 50.8
BraA03t14532Z Brassica rapa HOM05D000197 ORTHO05D000114 6.6e-27 124.4 122 50.8
BcaC03g17050 Brassica carinata HOM05D000197 ORTHO05D000114 8.7e-27 124.0 115 55.7
A02p32140 Brassica napus HOM05D000197 ORTHO05D000114 8.7e-27 124.0 115 55.7
C02p49690 Brassica napus HOM05D000197 ORTHO05D000114 8.7e-27 124.0 115 55.7
BraA02t08227Z Brassica rapa HOM05D000197 ORTHO05D000114 8.7e-27 124.0 115 55.7
THA.LOC104824137 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 8.7e-27 124.0 115 55.7
C09p30250 Brassica napus HOM05D000197 ORTHO05D000114 1.1e-26 123.6 115 55.7
BolC9t55889H Brassica oleracea HOM05D000197 ORTHO05D000114 1.1e-26 123.6 115 55.7
BraA03t14531Z Brassica rapa HOM05D000197 ORTHO05D000114 1.1e-26 123.6 115 54.8
A06p10980 Brassica napus HOM05D000197 ORTHO05D000114 1.5e-26 123.2 115 51.3
C01p18840 Brassica napus HOM05D000197 ORTHO05D000114 1.5e-26 123.2 117 51.3
BraA06t24277Z Brassica rapa HOM05D000197 ORTHO05D000114 1.5e-26 123.2 115 51.3
AT3G26460 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.9e-26 122.9 116 52.6
BcaC04g21575 Brassica carinata HOM05D000197 ORTHO05D000114 1.9e-26 122.9 115 55.7
BcaB07g30391 Brassica carinata HOM05D000197 ORTHO05D000114 2.5e-26 122.5 115 54.8
BcaB07g30736 Brassica carinata HOM05D000197 ORTHO05D000114 2.5e-26 122.5 115 54.8
AT2G01530 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 3.3e-26 122.1 115 53.0
BcaNung03440 Brassica carinata HOM05D000197 ORTHO05D000114 4.3e-26 121.7 115 54.8
C07p52960 Brassica napus HOM05D000197 ORTHO05D000114 4.3e-26 121.7 115 54.8
BolC2t11049H Brassica oleracea HOM05D000197 ORTHO05D000114 4.3e-26 121.7 122 51.6
BolC2t11050H Brassica oleracea HOM05D000197 ORTHO05D000114 4.3e-26 121.7 122 51.6
BolC7t45795H Brassica oleracea HOM05D000197 ORTHO05D000114 4.3e-26 121.7 115 54.8
AL5G15240 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 5.6e-26 121.3 116 53.4
AL7G29690 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 5.6e-26 121.3 115 53.0
A03p54640 Brassica napus HOM05D000197 ORTHO05D000114 5.6e-26 121.3 115 53.9
A09p23460 Brassica napus HOM05D000197 ORTHO05D000114 7.3e-26 120.9 115 53.9
AT4G14060 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.3e-25 120.2 115 53.9
BolC7t45797H Brassica oleracea HOM05D000197 ORTHO05D000114 1.3e-25 120.2 119 52.9
BolC1t01809H Brassica oleracea HOM05D000197 ORTHO05D000114 1.6e-25 119.8 125 50.4
Carub.0007s1745 Capsella rubella HOM05D000197 ORTHO05D000114 2.1e-25 119.4 115 52.2
AL1G27020 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 3.6e-25 118.6 115 52.2
Carub.0005s0446 Capsella rubella HOM05D000197 ORTHO05D000114 6.2e-25 117.9 114 50.9
Carub.0005s0444 Capsella rubella HOM05D000197 ORTHO05D000114 1.4e-24 116.7 114 50.9
C05p13030 Brassica napus HOM05D000197 ORTHO05D000114 3.1e-24 115.5 111 50.5
Carub.0005s0443 Capsella rubella HOM05D000197 ORTHO05D000114 4.0e-24 115.2 114 50.9
AT1G14960 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 6.9e-24 114.4 115 48.7
AT3G26450 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 6.9e-24 114.4 116 48.3
Carub.0005s0445 Capsella rubella HOM05D000197 ORTHO05D000114 6.9e-24 114.4 114 50.9
BraA09t37946Z Brassica rapa HOM05D000197 ORTHO05D000114 3.4e-23 112.1 116 50.0
THA.LOC104823795 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 1.1e-21 107.1 120 50.8
BolC1t01811H Brassica oleracea HOM05D000197 ORTHO05D000114 7.1e-21 104.4 115 48.7
CARHR231060 Cardamine hirsuta HOM05D000197 ORTHO05D000114 7.1e-21 104.4 99 54.5
AL1G45410 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 1.6e-20 103.2 115 46.1
BcaC05g25102 Brassica carinata HOM05D000197 ORTHO05D000114 2.1e-20 102.8 64 65.6
C03p80390 Brassica napus HOM05D000197 ORTHO05D000114 2.1e-20 102.8 99 51.5
AT1G30990 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.1e-18 97.1 115 43.5
BcaC05g25427 Brassica carinata HOM05D000197 ORTHO05D000114 2.5e-18 95.9 74 58.1
Carub.0001s1471 Capsella rubella HOM05D000197 ORTHO05D000114 7.4e-18 94.4 70 57.1
Carub.0001s1473 Capsella rubella HOM05D000197 ORTHO05D000114 7.4e-18 94.4 117 41.0
C07p52970 Brassica napus HOM05D000197 ORTHO05D000114 1.8e-16 89.7 108 44.4
AL5G10550 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 4.0e-16 88.6 61 60.7
BcaC09g50958 Brassica carinata HOM05D000197 ORTHO05D000114 9.0e-16 87.4 59 66.1
Sp7g21610 Schrenkiella parvula HOM05D000197 ORTHO05D000114 2.0e-15 86.3 118 43.2
CARHR147290 Cardamine hirsuta HOM05D000197 ORTHO05D000114 4.5e-15 85.1 60 65.0
BolC3t20287H Brassica oleracea HOM05D000197 ORTHO05D000114 4.9e-14 81.6 61 59.0
BolC5t30044H Brassica oleracea HOM05D000197 ORTHO05D000114 2.1e-12 76.3 90 45.6
Eucgr.G02170 Eucalyptus grandis HOM05D000197 ORTHO05D000114 2.7e-12 75.9 116 39.7
C05p12970 Brassica napus HOM05D000197 ORTHO05D000114 1.3e-11 73.6 90 44.4
BcaB03g14146 Brassica carinata HOM05D000197 ORTHO05D000114 1.8e-11 73.2 44 68.2
Eucgr.G02175 Eucalyptus grandis HOM05D000197 ORTHO05D000114 3.0e-11 72.4 116 38.8
Eucgr.L02425 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.1e-10 70.5 118 39.0
Eucgr.L02071 Eucalyptus grandis HOM05D000197 ORTHO05D000114 2.5e-10 69.3 116 37.9
COL.COLO4_25084 Corchorus olitorius HOM05D000197 ORTHO05D000114 4.3e-10 68.6 98 34.7
Eucgr.G02172 Eucalyptus grandis HOM05D000197 ORTHO05D000114 5.6e-10 68.2 116 37.1
C01p18790 Brassica napus HOM05D000197 ORTHO05D000114 2.8e-09 65.9 84 45.2
Eucgr.G02174 Eucalyptus grandis HOM05D000197 ORTHO05D000114 3.7e-09 65.5 116 37.1
Eucgr.G02177 Eucalyptus grandis HOM05D000197 ORTHO05D000114 3.7e-09 65.5 116 35.3
PGR142G1929 Punica granatum HOM05D000197 ORTHO05D000114 8.2e-09 64.3 116 35.3
Eucgr.G02176 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.4e-08 63.5 114 34.2
PGR102G1869 Punica granatum HOM05D000197 ORTHO05D000114 1.4e-08 63.5 116 36.2
PGR042G0113 Punica granatum HOM05D000197 ORTHO05D000114 1.8e-08 63.2 118 32.2
Prupe.1G328200 Prunus persica HOM05D000197 ORTHO05D000114 3.1e-08 62.4 114 33.3
PGR119G0998 Punica granatum HOM05D000197 ORTHO05D000114 3.1e-08 62.4 116 34.5
PGR119G0067 Punica granatum HOM05D000197 ORTHO05D000114 4.0e-08 62.0 116 36.2
PGR119G2134 Punica granatum HOM05D000197 ORTHO05D000114 4.0e-08 62.0 116 33.6
COL.COLO4_13150 Corchorus olitorius HOM05D000197 ORTHO05D000114 1.5e-07 60.1 98 33.7
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 2.0e-07 59.7 121 33.9
PGR119G0149 Punica granatum HOM05D000197 ORTHO05D000114 2.0e-07 59.7 116 33.6
Sed0023200 Sechium edule HOM05D000197 ORTHO05D000114 2.6e-07 59.3 125 29.6
PGR119G0513 Punica granatum HOM05D000197 ORTHO05D000114 4.5e-07 58.5 116 34.5
Sed0022109 Sechium edule HOM05D000197 ORTHO05D000114 4.5e-07 58.5 116 32.8
Sed0022576 Sechium edule HOM05D000197 ORTHO05D000114 4.5e-07 58.5 125 29.6
MELO3C015014.2 Cucumis melo HOM05D000197 ORTHO05D000114 5.8e-07 58.2 121 31.4
Manes.15G129500 Manihot esculenta HOM05D000197 ORTHO05D000114 5.8e-07 58.2 116 35.3
PGR119G1904 Punica granatum HOM05D000197 ORTHO05D000114 5.8e-07 58.2 116 32.8
Sed0025853 Sechium edule HOM05D000197 ORTHO05D000114 5.8e-07 58.2 106 33.0
MELO3C015005.2 Cucumis melo HOM05D000197 ORTHO05D000114 7.6e-07 57.8 118 31.4
TWI79G1111 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 7.6e-07 57.8 119 35.3
MELO3C015002.2 Cucumis melo HOM05D000197 ORTHO05D000114 1.0e-06 57.4 60 41.7
Sed0004882 Sechium edule HOM05D000197 ORTHO05D000114 1.0e-06 57.4 121 31.4
CsaV3_5G014980 Cucumis sativus L. HOM05D000197 ORTHO05D000114 1.3e-06 57.0 62 41.9
FAN12G3177 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.3e-06 57.0 117 34.2
PGR042G1762 Punica granatum HOM05D000197 ORTHO05D000114 1.7e-06 56.6 114 31.6
CsaV3_5G014880 Cucumis sativus L. HOM05D000197 ORTHO05D000114 2.2e-06 56.2 121 30.6
Eucgr.B02918 Eucalyptus grandis HOM05D000197 ORTHO05D000114 2.2e-06 56.2 127 31.5
PGR042G3838 Punica granatum HOM05D000197 ORTHO05D000114 2.2e-06 56.2 114 30.7
RcHm_v2.0_Chr4g0441681 Rosa chinensis HOM05D000197 ORTHO05D000114 2.2e-06 56.2 119 33.6
PGR102G2287 Punica granatum HOM05D000197 ORTHO05D000114 2.9e-06 55.8 112 34.8
MELO3C015016.2 Cucumis melo HOM05D000197 ORTHO05D000114 4.9e-06 55.1 72 36.1
MD16G1024700 Malus domestica HOM05D000197 ORTHO05D000114 4.9e-06 55.1 119 35.3
PGR119G1939 Punica granatum HOM05D000197 ORTHO05D000114 4.9e-06 55.1 108 34.3
CANSAT64G2178 Cannabis sativa HOM05D000197 ORTHO05D000114 6.5e-06 54.7 114 30.7
Sed0010754 Sechium edule HOM05D000197 ORTHO05D000114 6.5e-06 54.7 60 41.7
Sed0015475 Sechium edule HOM05D000197 ORTHO05D000114 6.5e-06 54.7 60 41.7


User provided reference genes

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