Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 2.3e-37 158.3 75 100.0
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 9.7e-36 152.9 75 97.3
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 9.7e-36 152.9 75 97.3
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 9.7e-36 152.9 75 97.3
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 8.2e-35 149.8 75 94.7
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 5.3e-34 147.1 75 96.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.0e-33 145.2 75 94.7
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.6e-33 144.8 75 93.3
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.6e-33 144.8 75 93.3
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 2.9e-32 141.4 75 92.0
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.0e-32 140.6 75 92.0
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.9e-31 138.7 75 88.0
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 5.5e-31 137.1 75 89.3
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 2.1e-30 135.2 75 88.0
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 2.1e-30 135.2 75 88.0
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 2.1e-30 135.2 75 88.0
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 2.1e-30 135.2 75 88.0
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.1e-30 135.2 75 88.0
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 3.6e-30 134.4 75 86.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 4.7e-30 134.0 75 86.7
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-29 132.5 75 86.7
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.3e-29 131.7 75 86.7
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.1e-29 130.6 75 84.0
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 6.7e-29 130.2 75 86.7
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 8.8e-29 129.8 75 84.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 5.7e-28 127.1 76 81.6
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 9.7e-28 126.3 69 84.1
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.7e-27 124.4 69 79.7
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 8.2e-27 123.2 75 80.0
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-26 122.1 75 82.7
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.1e-23 112.8 74 73.0
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 1.4e-23 112.5 68 73.5
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 5.5e-23 110.5 65 76.9
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.6e-22 109.0 69 69.6
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.6e-22 109.0 68 76.5
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 2.7e-22 108.2 72 70.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 3.6e-22 107.8 74 68.9
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 3.6e-22 107.8 74 70.3
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 4.7e-22 107.5 69 71.0
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.0e-21 106.3 66 75.8
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.3e-21 105.1 71 70.4
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.3e-21 105.1 73 69.9
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.0e-21 104.8 65 81.5
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 3.0e-21 104.8 75 65.3
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 3.0e-21 104.8 73 65.8
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.9e-21 104.4 68 73.5
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 3.9e-21 104.4 75 65.3
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 6.7e-21 103.6 59 74.6
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 6.7e-21 103.6 59 74.6
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 6.7e-21 103.6 59 74.6
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.7e-21 103.6 70 68.6
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 6.7e-21 103.6 68 67.6
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 8.8e-21 103.2 66 71.2
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 8.8e-21 103.2 70 68.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 8.8e-21 103.2 70 68.6
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.1e-20 102.8 61 73.8
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.1e-20 102.8 70 68.6
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.5e-20 102.4 61 75.4
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.5e-20 102.4 70 65.7
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.5e-20 102.4 66 69.7
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 2.6e-20 101.7 57 78.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.6e-20 101.7 64 73.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 3.3e-20 101.3 57 78.9
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 4.4e-20 100.9 61 73.8
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 4.4e-20 100.9 61 73.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 4.4e-20 100.9 59 74.6
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 4.4e-20 100.9 68 66.2
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 4.4e-20 100.9 61 73.8
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 5.7e-20 100.5 75 66.7
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 7.4e-20 100.1 63 71.4
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.3e-19 99.4 64 67.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.3e-19 99.4 65 69.2
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 2.2e-19 98.6 61 73.8
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.2e-19 98.6 53 81.1
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 2.8e-19 98.2 64 70.3
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 3.7e-19 97.8 69 68.1
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 4.8e-19 97.4 62 69.4
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 6.3e-19 97.1 70 62.9
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.2e-19 96.7 53 79.2
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.4e-18 95.9 60 70.0
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.4e-18 95.9 73 65.8
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 2.4e-18 95.1 57 71.9
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 2.4e-18 95.1 57 71.9
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.1e-18 94.7 53 79.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 5.3e-18 94.0 54 72.2
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 9.1e-18 93.2 71 59.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 9.1e-18 93.2 71 59.2
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 9.1e-18 93.2 59 67.8
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.2e-17 92.8 62 67.7
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.2e-17 92.8 66 65.2
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.6e-17 92.4 69 63.8
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 2.0e-17 92.0 49 79.6
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.0e-17 92.0 64 62.5
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 2.0e-17 92.0 53 73.6
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 4.5e-17 90.9 58 69.0
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 4.5e-17 90.9 66 63.6
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.5e-17 90.9 62 66.1
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 7.7e-17 90.1 60 63.3
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 7.7e-17 90.1 60 63.3
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.0e-16 89.7 63 60.3
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 1.3e-16 89.4 58 74.1
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.3e-16 89.4 58 72.4
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.9e-16 88.2 61 67.2
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 2.9e-16 88.2 62 61.3
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 6.5e-16 87.0 59 69.5
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.1e-15 86.3 58 70.7
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.1e-15 86.3 47 80.9
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 2.5e-15 85.1 58 63.8
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 4.2e-15 84.3 69 58.0
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 4.2e-15 84.3 62 64.5
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 7.2e-15 83.6 46 78.3
BcaB08g35768 Brassica carinata HOM05D005857 ORTHO05D007193 2.7e-14 81.6 44 90.9
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.7e-14 81.6 54 66.7
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 2.7e-14 81.6 62 61.3
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.0e-13 79.7 37 94.6
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.0e-13 77.8 61 62.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.5e-12 73.6 52 63.5
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.4e-10 69.3 63 46.0
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 3.1e-10 68.2 50 58.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.7e-09 65.1 61 50.8
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 2.2e-08 62.0 30 83.3
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 8.5e-08 60.1 51 47.1
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 2.5e-07 58.5 50 46.0
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 7.2e-07 57.0 61 49.2
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 7.2e-07 57.0 61 49.2
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 9.4e-07 56.6 62 43.5
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.6e-06 55.8 48 50.0
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 3.6e-06 54.7 57 47.4


User provided reference genes

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