Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 1.1e-88 330.1 185 100.0
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 6.2e-84 314.3 198 90.4
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 8.1e-84 313.9 198 91.9
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 1.7e-81 306.2 198 88.4
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 2.7e-79 298.9 198 86.4
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 2.4e-75 285.8 198 80.3
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 1.1e-72 276.9 202 77.2
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 7.9e-71 270.8 200 77.0
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 1.9e-69 266.2 200 75.5
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 9.6e-69 263.8 199 75.4
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 9.6e-69 263.8 201 76.1
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 1.5e-66 256.5 201 74.6
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 3.3e-53 212.2 189 63.0
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 6.9e-51 204.5 135 77.8
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 6.9e-51 204.5 137 78.1
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 1.5e-50 203.4 199 55.8
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.5e-50 203.4 137 78.1
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.5e-50 203.4 137 78.1
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.5e-50 203.4 137 78.1
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 1.5e-50 203.4 140 75.0
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 2.0e-50 203.0 200 59.0
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 2.0e-50 203.0 138 74.6
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 2.6e-50 202.6 130 77.7
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 4.5e-50 201.8 197 57.9
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 4.5e-50 201.8 201 58.2
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 5.9e-50 201.4 170 65.3
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 7.6e-50 201.1 137 74.5
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 7.6e-50 201.1 138 73.9
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 7.6e-50 201.1 128 78.9
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 1.0e-49 200.7 128 80.5
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.0e-49 200.7 128 80.5
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.3e-49 200.3 137 76.6
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 1.7e-49 199.9 129 77.5
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 1.7e-49 199.9 131 77.9
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 2.2e-49 199.5 138 72.5
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.2e-49 199.5 135 76.3
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.2e-49 199.5 135 76.3
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 2.2e-49 199.5 138 73.9
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 2.2e-49 199.5 128 78.1
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 2.2e-49 199.5 135 74.8
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 2.9e-49 199.1 133 75.9
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 2.9e-49 199.1 138 73.9
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 3.8e-49 198.7 202 63.9
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 6.5e-49 198.0 136 73.5
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 6.5e-49 198.0 128 77.3
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 1.4e-48 196.8 134 73.9
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 1.9e-48 196.4 129 76.0
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 2.5e-48 196.1 129 76.0
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 4.2e-48 195.3 125 80.0
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 7.2e-48 194.5 130 73.8
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 1.2e-47 193.7 129 74.4
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 2.7e-47 192.6 134 74.6
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 2.7e-47 192.6 131 75.6
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 7.9e-47 191.0 128 74.2
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.0e-46 190.7 140 70.7
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 2.3e-46 189.5 138 72.5
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 3.0e-46 189.1 127 74.8
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 3.0e-46 189.1 121 80.2
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 3.9e-46 188.7 140 71.4
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 3.9e-46 188.7 140 71.4
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 3.9e-46 188.7 137 72.3
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 3.9e-46 188.7 133 72.2
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 5.1e-46 188.3 188 59.6
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 5.1e-46 188.3 129 72.1
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 5.1e-46 188.3 129 72.1
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 8.7e-46 187.6 131 72.5
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 8.7e-46 187.6 131 72.5
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 1.1e-45 187.2 128 73.4
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.1e-45 187.2 137 70.8
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 1.9e-45 186.4 182 56.6
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 1.9e-45 186.4 128 75.0
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 2.5e-45 186.0 143 68.5
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 3.3e-45 185.7 201 62.2
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 4.3e-45 185.3 133 69.9
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 7.4e-45 184.5 130 74.6
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 1.6e-44 183.3 128 72.7
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 2.2e-44 183.0 142 70.4
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 4.8e-44 181.8 139 69.1
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 4.8e-44 181.8 129 73.6
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 1.1e-43 180.6 187 55.6
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 1.8e-43 179.9 139 68.3
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 1.8e-43 179.9 201 56.7
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 2.4e-43 179.5 143 69.2
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 2.4e-43 179.5 143 69.2
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 2.4e-43 179.5 143 69.2
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 5.3e-43 178.3 200 56.5
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 6.9e-43 177.9 197 55.3
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 2.0e-42 176.4 140 68.6
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 2.0e-42 176.4 141 72.3
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 4.5e-42 175.3 138 67.4
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 1.7e-41 173.3 130 70.8
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 2.2e-41 172.9 131 68.7
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 3.8e-41 172.2 209 50.7
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 5.0e-41 171.8 120 70.8
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 7.2e-40 167.9 137 63.5
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 1.0e-38 164.1 120 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 5.7e-37 158.3 139 57.6
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 2.8e-36 156.0 129 58.9
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 4.8e-36 155.2 139 61.9
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 2.4e-35 152.9 129 58.1
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 4.1e-35 152.1 113 68.1
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 1.2e-34 150.6 113 68.1
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 3.4e-34 149.1 111 66.7
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 5.9e-34 148.3 141 57.4
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 3.6e-31 139.0 112 60.7
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 6.7e-30 134.8 125 58.4
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.4e-27 127.1 116 59.5
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 7.0e-27 124.8 126 47.6
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 6.1e-15 85.1 127 34.6
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 4.1e-11 72.4 104 40.4
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 1.6e-10 70.5 112 35.7
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 8.0e-07 58.2 111 27.9
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 1.8e-06 57.0 42 61.9


User provided reference genes

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