Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25317 Brassica carinata HOM05D000558 ORTHO05D003119 4.8e-70 267.7 134 100.0
BcaC05g25318 Brassica carinata HOM05D000558 ORTHO05D003119 1.6e-57 226.1 113 100.0
BolC5t29955H Brassica oleracea HOM05D000558 ORTHO05D003119 1.0e-56 223.4 113 99.1
C05p11990 Brassica napus HOM05D000558 ORTHO05D003119 8.8e-56 220.3 113 98.2
BraA06t24204Z Brassica rapa HOM05D000558 ORTHO05D003119 1.1e-53 213.4 113 94.7
A06p10210 Brassica napus HOM05D000558 ORTHO05D003119 5.4e-53 211.1 113 92.9
Sp1g12580 Schrenkiella parvula HOM05D000558 ORTHO05D003119 1.2e-39 166.8 119 73.9
Thhalv10007159m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 2.3e-35 152.5 119 68.9
Carub.0001s1392 Capsella rubella HOM05D000558 ORTHO05D003119 2.1e-33 146.0 117 65.0
CARHR014660 Cardamine hirsuta HOM05D000558 ORTHO05D003119 4.7e-33 144.8 121 64.5
AL1G26120 Arabidopsis lyrata HOM05D000558 ORTHO05D003119 1.0e-32 143.7 116 63.8
AT1G14230 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 8.9e-32 140.6 117 64.1
THA.LOC104805162 Tarenaya hassleriana HOM05D000558 ORTHO05D003119 2.7e-28 129.0 117 58.1
AT2G02970 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 3.0e-27 125.6 120 55.0
Aa31LG2G7370 Aethionema arabicum HOM05D000558 ORTHO05D003119 1.1e-26 123.6 119 56.3
Thhalv10003943m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 3.6e-25 118.6 120 55.0
Sp2g14010 Schrenkiella parvula HOM05D000558 ORTHO05D003119 6.2e-25 117.9 120 54.2
Carub.0005s0185 Capsella rubella HOM05D000558 ORTHO05D003119 8.1e-25 117.5 120 53.3
THA.LOC104824081 Tarenaya hassleriana HOM05D000558 ORTHO05D003119 1.4e-24 116.7 120 54.2
CARHR014670 Cardamine hirsuta HOM05D000558 ORTHO05D003119 2.3e-24 115.9 117 61.5
CARHR145390 Cardamine hirsuta HOM05D000558 ORTHO05D003119 2.0e-23 112.8 120 50.8
Thhalv10007501m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 3.4e-23 112.1 132 53.8
BcaC06g31208 Brassica carinata HOM05D000558 ORTHO05D003119 4.4e-23 111.7 121 53.7
BcaC06g34027 Brassica carinata HOM05D000558 ORTHO05D003119 4.4e-23 111.7 120 54.2
A06p43350 Brassica napus HOM05D000558 ORTHO05D003119 4.4e-23 111.7 129 52.7
C07p33600 Brassica napus HOM05D000558 ORTHO05D003119 4.4e-23 111.7 120 54.2
BolC7t43869H Brassica oleracea HOM05D000558 ORTHO05D003119 4.4e-23 111.7 120 54.2
BraA06t27221Z Brassica rapa HOM05D000558 ORTHO05D003119 4.4e-23 111.7 129 52.7
Aa31LG1G810 Aethionema arabicum HOM05D000558 ORTHO05D003119 9.8e-23 110.5 118 53.4
Thhalv10007616m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 2.9e-22 109.0 120 54.2
AL1G26130 Arabidopsis lyrata HOM05D000558 ORTHO05D003119 4.9e-22 108.2 120 53.3
Sp1g12590 Schrenkiella parvula HOM05D000558 ORTHO05D003119 8.3e-22 107.5 97 61.9
C05p12000 Brassica napus HOM05D000558 ORTHO05D003119 1.1e-21 107.1 99 59.6
A06p10220 Brassica napus HOM05D000558 ORTHO05D003119 1.4e-21 106.7 116 53.4
BraA06t24205Z Brassica rapa HOM05D000558 ORTHO05D003119 1.4e-21 106.7 116 53.4
C08p45880 Brassica napus HOM05D000558 ORTHO05D003119 5.4e-21 104.8 124 51.6
AT1G14250 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 1.2e-20 103.6 123 53.7
BcaC07g41586 Brassica carinata HOM05D000558 ORTHO05D003119 1.2e-20 103.6 124 50.8
BolC8t52140H Brassica oleracea HOM05D000558 ORTHO05D003119 1.2e-20 103.6 124 50.8
CsaV3_2G010660 Cucumis sativus L. HOM05D000558 ORTHO05D003119 1.7e-19 99.8 116 50.9
AL5G12590 Arabidopsis lyrata HOM05D000558 ORTHO05D003119 2.3e-19 99.4 71 69.0
MELO3C008546.2 Cucumis melo HOM05D000558 ORTHO05D003119 3.0e-19 99.0 116 49.1
MD13G1072000 Malus domestica HOM05D000558 ORTHO05D003119 6.6e-19 97.8 127 50.4
Manes.01G185200 Manihot esculenta HOM05D000558 ORTHO05D003119 1.5e-18 96.7 113 46.9
Prupe.1G275000 Prunus persica HOM05D000558 ORTHO05D003119 1.5e-18 96.7 125 47.2
ClCG11G007370 Citrullus lanatus HOM05D000558 ORTHO05D003119 5.6e-18 94.7 116 50.0
MD16G1072600 Malus domestica HOM05D000558 ORTHO05D003119 9.5e-18 94.0 127 50.4
RcHm_v2.0_Chr4g0439831 Rosa chinensis HOM05D000558 ORTHO05D003119 9.5e-18 94.0 114 48.2
Cfa008978 Carpinus fangiana HOM05D000558 ORTHO05D003119 1.6e-17 93.2 118 43.2
Thhalv10009320m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 1.6e-17 93.2 116 52.6
Manes.05G102900 Manihot esculenta HOM05D000558 ORTHO05D003119 1.6e-17 93.2 112 47.3
Sed0028228 Sechium edule HOM05D000558 ORTHO05D003119 2.1e-17 92.8 116 47.4
Sp1g12600 Schrenkiella parvula HOM05D000558 ORTHO05D003119 2.8e-17 92.4 82 62.2
Haze_12009 Corylus avellana HOM05D000558 ORTHO05D003119 8.1e-17 90.9 115 41.7
CANSAT64G2971 Cannabis sativa HOM05D000558 ORTHO05D003119 1.8e-16 89.7 114 41.2
CiPaw.05G134900 Carya illinoinensis HOM05D000558 ORTHO05D003119 1.8e-16 89.7 116 44.8
Eucgr.G02502 Eucalyptus grandis HOM05D000558 ORTHO05D003119 1.8e-16 89.7 119 44.5
PGR119G0307 Punica granatum HOM05D000558 ORTHO05D003119 2.3e-16 89.4 128 42.2
Sed0021523 Sechium edule HOM05D000558 ORTHO05D003119 3.1e-16 89.0 113 46.9
Thhalv10007743m.g Eutrema salsugineum HOM05D000558 ORTHO05D003119 5.2e-16 88.2 80 60.0
AT1G14240 Arabidopsis thaliana HOM05D000558 ORTHO05D003119 6.8e-16 87.8 60 71.7
QL03p063904 Quercus lobata HOM05D000558 ORTHO05D003119 6.8e-16 87.8 127 42.5
Nitab4.5_0000145g0030 Nicotiana tabacum HOM05D000558 ORTHO05D003119 1.5e-15 86.7 115 42.6
PGSC0003DMG400018413 Solanum tuberosum HOM05D000558 ORTHO05D003119 1.5e-15 86.7 108 44.4
Duzib251G0589 Durio zibethinus HOM05D000558 ORTHO05D003119 2.6e-15 85.9 121 43.0
FvH4_4g31330 Fragaria vesca HOM05D000558 ORTHO05D003119 2.6e-15 85.9 117 43.6
SGA_v2.0_scaffold53G19350 Striga asiatica HOM05D000558 ORTHO05D003119 4.4e-15 85.1 117 42.7
Solyc05g007670.4 Solanum lycopersicum HOM05D000558 ORTHO05D003119 5.8e-15 84.7 114 44.7
Nitab4.5_0004661g0070 Nicotiana tabacum HOM05D000558 ORTHO05D003119 7.6e-15 84.3 115 44.3
Cpa.g.sc128.27 Carica papaya HOM05D000558 ORTHO05D003119 9.9e-15 84.0 117 44.4
FAN07G1056 Fragaria x ananassa HOM05D000558 ORTHO05D003119 9.9e-15 84.0 117 44.4
Peaxi162Scf00222g00822 Petunia axillaris HOM05D000558 ORTHO05D003119 9.9e-15 84.0 112 40.2
Sopen05g003550 Solanum pennellii HOM05D000558 ORTHO05D003119 2.2e-14 82.8 114 43.9
COL.COLO4_23019 Corchorus olitorius HOM05D000558 ORTHO05D003119 2.9e-14 82.4 120 42.5
Migut.L01291 Erythranthe guttata HOM05D000558 ORTHO05D003119 2.9e-14 82.4 116 44.8
FAN17G0327 Fragaria x ananassa HOM05D000558 ORTHO05D003119 3.7e-14 82.0 117 43.6
FAN12G4027 Fragaria x ananassa HOM05D000558 ORTHO05D003119 4.9e-14 81.6 117 41.9
Hma1.2p1_0795F.1_g218850 Hydrangea macrophylla HOM05D000558 ORTHO05D003119 4.9e-14 81.6 115 41.7
TWI79G0306 Tripterygium wilfordii HOM05D000558 ORTHO05D003119 6.4e-14 81.3 113 44.2
FAN22G0385 Fragaria x ananassa HOM05D000558 ORTHO05D003119 8.4e-14 80.9 117 43.6
HanXRQChr17g0570791 Helianthus annuus HOM05D000558 ORTHO05D003119 8.4e-14 80.9 81 46.9
AUR62028770 Chenopodium quinoa HOM05D000558 ORTHO05D003119 1.1e-13 80.5 121 40.5
Duzib268G0620 Durio zibethinus HOM05D000558 ORTHO05D003119 1.4e-13 80.1 127 37.0
Nn4g23172 Nelumbo nucifera HOM05D000558 ORTHO05D003119 1.9e-13 79.7 140 38.6
Oeu055112.1 Olea europaea HOM05D000558 ORTHO05D003119 1.9e-13 79.7 105 47.6
Atru.chr11.1781 Acer truncatum HOM05D000558 ORTHO05D003119 2.4e-13 79.3 127 40.2
Sabra08G0064200 Salix brachista HOM05D000558 ORTHO05D003119 2.4e-13 79.3 114 45.6
TWI31G0078 Tripterygium wilfordii HOM05D000558 ORTHO05D003119 2.4e-13 79.3 116 46.6
Dinv16648 Davidia involucrata HOM05D000558 ORTHO05D003119 4.1e-13 78.6 112 42.9
Gohir.D13G075000 Gossypium hirsutum HOM05D000558 ORTHO05D003119 4.1e-13 78.6 113 41.6
Gorai.013G085700 Gossypium raimondii HOM05D000558 ORTHO05D003119 4.1e-13 78.6 113 41.6
MSTRG.701 Avicennia marina HOM05D000558 ORTHO05D003119 5.4e-13 78.2 116 41.4
AUR62005791 Chenopodium quinoa HOM05D000558 ORTHO05D003119 5.4e-13 78.2 120 37.5
Gohir.D12G168000 Gossypium hirsutum HOM05D000558 ORTHO05D003119 5.4e-13 78.2 118 43.2
SalBow2G1515 Salvia bowleyana HOM05D000558 ORTHO05D003119 5.4e-13 78.2 113 40.7
Potri.008G086400 Populus trichocarpa HOM05D000558 ORTHO05D003119 7.1e-13 77.8 114 45.6
CAN.G1335.7 Capsicum annuum HOM05D000558 ORTHO05D003119 9.2e-13 77.4 86 47.7
Gorai.008G180900 Gossypium raimondii HOM05D000558 ORTHO05D003119 1.2e-12 77.0 118 42.4
EL10Ac6g13208 Beta vulgaris HOM05D000558 ORTHO05D003119 2.1e-12 76.3 124 37.1
Thecc.02G345900 Theobroma cacao HOM05D000558 ORTHO05D003119 2.1e-12 76.3 128 38.3
Carub.0001s1393 Capsella rubella HOM05D000558 ORTHO05D003119 4.6e-12 75.1 81 55.6
Lj6A787T57 Lonicera japonica HOM05D000558 ORTHO05D003119 4.6e-12 75.1 111 42.3
Lsat_1_v5_gn_4_9800 Lactuca sativa HOM05D000558 ORTHO05D003119 6.0e-12 74.7 74 50.0
Actinidia04105 Actinidia chinensis HOM05D000558 ORTHO05D003119 7.8e-12 74.3 115 43.5
Potri.010G169100 Populus trichocarpa HOM05D000558 ORTHO05D003119 7.8e-12 74.3 78 51.3
Sc04g0008100 Simmondsia chinensis HOM05D000558 ORTHO05D003119 7.8e-12 74.3 111 36.0
MSTRG.7799 Avicennia marina HOM05D000558 ORTHO05D003119 1.0e-11 73.9 116 41.4
CSS0007961 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D003119 1.0e-11 73.9 118 37.3
ECA234G4419 Erigeron canadensis HOM05D000558 ORTHO05D003119 1.0e-11 73.9 119 37.0
Hma1.2p1_3376F.1_g335680 Hydrangea macrophylla HOM05D000558 ORTHO05D003119 1.0e-11 73.9 58 58.6
TAR622G1042 Trochodendron aralioides HOM05D000558 ORTHO05D003119 1.0e-11 73.9 83 49.4
DCAR_007153 Daucus carota HOM05D000558 ORTHO05D003119 1.3e-11 73.6 79 49.4
Ah.03g135050 Amaranthus hybridus HOM05D000558 ORTHO05D003119 1.7e-11 73.2 104 38.5
HanXRQChr12g0380761 Helianthus annuus HOM05D000558 ORTHO05D003119 1.7e-11 73.2 86 45.3
Lsat_1_v5_gn_3_52320 Lactuca sativa HOM05D000558 ORTHO05D003119 1.7e-11 73.2 83 43.4
Oeu054873.2 Olea europaea HOM05D000558 ORTHO05D003119 2.3e-11 72.8 85 44.7
CSS0017226 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D003119 3.9e-11 72.0 116 42.2
Hund25233 Selenicereus undatus HOM05D000558 ORTHO05D003119 5.1e-11 71.6 112 39.3
Cc11_g12990 Coffea canephora HOM05D000558 ORTHO05D003119 6.6e-11 71.2 126 38.1
Glyma.01G047100 Glycine max HOM05D000558 ORTHO05D003119 1.5e-10 70.1 113 39.8
TAR374G1351 Trochodendron aralioides HOM05D000558 ORTHO05D003119 1.5e-10 70.1 132 38.6
Lj2g0023233 Lotus japonicus HOM05D000558 ORTHO05D003119 1.9e-10 69.7 75 48.0
Lalb_Chr10g0098291 Lupinus albus HOM05D000558 ORTHO05D003119 1.9e-10 69.7 82 45.1
Carub.0005s0188 Capsella rubella HOM05D000558 ORTHO05D003119 3.3e-10 68.9 88 45.5
Ciclev10031190m.g Citrus clementina HOM05D000558 ORTHO05D003119 4.3e-10 68.6 118 39.8
BcaB06g26570 Brassica carinata HOM05D000558 ORTHO05D003119 5.6e-10 68.2 100 42.0
Nn3g17244 Nelumbo nucifera HOM05D000558 ORTHO05D003119 5.6e-10 68.2 123 36.6
ATR0564G464 Amborella trichopoda HOM05D000558 ORTHO05D003119 7.3e-10 67.8 115 37.4
Psat2g119800 Pisum sativum HOM05D000558 ORTHO05D003119 9.6e-10 67.4 83 43.4
Gohir.A12G164900 Gossypium hirsutum HOM05D000558 ORTHO05D003119 1.2e-09 67.0 118 39.8
Gohir.A13G074800 Gossypium hirsutum HOM05D000558 ORTHO05D003119 1.2e-09 67.0 113 37.2
Hund05877 Selenicereus undatus HOM05D000558 ORTHO05D003119 2.1e-09 66.2 87 41.4
Medtr5g040710 Medicago truncatula HOM05D000558 ORTHO05D003119 2.8e-09 65.9 82 43.9
Ca_04797_v3 Cicer arietinum L. HOM05D000558 ORTHO05D003119 8.1e-09 64.3 76 46.1
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.1e-09 64.3 76 46.1
PSO478G4242 Papaver somniferum HOM05D000558 ORTHO05D003119 8.1e-09 64.3 103 37.9
CARHR014650 Cardamine hirsuta HOM05D000558 ORTHO05D003119 1.1e-08 63.9 44 70.5
Phvul.002G084900 Phaseolus vulgaris HOM05D000558 ORTHO05D003119 1.1e-08 63.9 95 38.9
Lalb_Chr17g0340701 Lupinus albus HOM05D000558 ORTHO05D003119 1.8e-08 63.2 54 57.4
VMungo1215G0130 Vigna mungo HOM05D000558 ORTHO05D003119 1.8e-08 63.2 97 40.2
PSO017G3323 Papaver somniferum HOM05D000558 ORTHO05D003119 2.4e-08 62.8 101 36.6
MBI02_g08831_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D003119 3.1e-08 62.4 100 39.0
TPR.G39223 Trifolium pratense HOM05D000558 ORTHO05D003119 5.2e-08 61.6 82 41.5
Zm00001eb041370 Zea mays HOM05D000558 ORTHO05D003119 1.5e-07 60.1 84 41.7
HPP92_016496 Vanilla planifolia HOM05D000558 ORTHO05D003119 2.6e-07 59.3 86 43.0
CDE08G0821 Ceratophyllum demersum HOM05D000558 ORTHO05D003119 4.4e-07 58.5 52 51.9
Glyma.02G107700 Glycine max HOM05D000558 ORTHO05D003119 1.3e-06 57.0 113 35.4
Zm00001eb018380 Zea mays HOM05D000558 ORTHO05D003119 1.7e-06 56.6 109 33.0
Zm00001eb392190 Zea mays HOM05D000558 ORTHO05D003119 2.2e-06 56.2 103 34.0
Os08g0436100 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D003119 6.4e-06 54.7 60 51.7


User provided reference genes

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