Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25315 Brassica carinata HOM05D001860 ORTHO05D004239 8.0e-126 453.8 226 100.0
BolC5t29953H Brassica oleracea HOM05D001860 ORTHO05D004239 2.1e-97 359.4 179 98.3
A06p10170 Brassica napus HOM05D001860 ORTHO05D004239 3.7e-91 338.6 183 93.4
BraA06t24201Z Brassica rapa HOM05D001860 ORTHO05D004239 4.6e-89 331.6 183 91.3
Sp1g12520 Schrenkiella parvula HOM05D001860 ORTHO05D004239 1.8e-69 266.5 203 73.9
AL1G26050 Arabidopsis lyrata HOM05D001860 ORTHO05D004239 1.4e-66 256.9 198 73.2
Carub.0001s1385 Capsella rubella HOM05D001860 ORTHO05D004239 1.9e-66 256.5 199 74.4
AT1G14180 Arabidopsis thaliana HOM05D001860 ORTHO05D004239 2.5e-63 246.1 192 72.4
Thhalv10008532m.g Eutrema salsugineum HOM05D001860 ORTHO05D004239 4.3e-63 245.4 193 72.0
BcaB08g34374 Brassica carinata HOM05D001860 ORTHO05D004239 2.2e-59 233.0 199 67.8
CARHR014580 Cardamine hirsuta HOM05D001860 ORTHO05D004239 3.8e-59 232.3 193 71.0
A09p62390 Brassica napus HOM05D001860 ORTHO05D004239 1.3e-46 190.7 190 62.1
BraA09t41604Z Brassica rapa HOM05D001860 ORTHO05D004239 4.8e-46 188.7 190 61.6
C05p11970 Brassica napus HOM05D001860 ORTHO05D004239 6.3e-46 188.3 93 97.8
C08p45960 Brassica napus HOM05D001860 ORTHO05D004239 6.3e-46 188.3 190 61.1
BolC8t52147H Brassica oleracea HOM05D001860 ORTHO05D004239 6.3e-46 188.3 190 61.1
BcaC07g41595 Brassica carinata HOM05D001860 ORTHO05D004239 6.9e-45 184.9 190 61.6
BcaC07g41592 Brassica carinata HOM05D001860 ORTHO05D004239 9.7e-39 164.5 190 57.4
THA.LOC104805168 Tarenaya hassleriana HOM05D001860 ORTHO05D004239 7.0e-29 131.7 243 42.0
Aa31LG1G910 Aethionema arabicum HOM05D001860 ORTHO05D004239 4.4e-23 112.5 189 42.9
Duzib268G0034 Durio zibethinus HOM05D001860 ORTHO05D004239 7.7e-20 101.7 287 33.4
CsaV3_5G032880 Cucumis sativus L. HOM05D001860 ORTHO05D004239 1.7e-19 100.5 267 34.5
Hma1.2p1_1079F.1_g254980 Hydrangea macrophylla HOM05D001860 ORTHO05D004239 1.5e-18 97.4 264 34.8
Thecc.02G343600 Theobroma cacao HOM05D001860 ORTHO05D004239 4.2e-18 95.9 213 35.7
ClCG05G024140 Citrullus lanatus HOM05D001860 ORTHO05D004239 5.5e-18 95.5 267 32.6
Duzib251G0636 Durio zibethinus HOM05D001860 ORTHO05D004239 1.2e-17 94.4 214 35.5
Eucgr.B03212 Eucalyptus grandis HOM05D001860 ORTHO05D004239 8.0e-17 91.7 270 33.7
Sed0006733 Sechium edule HOM05D001860 ORTHO05D004239 5.2e-16 89.0 264 32.6
PGR119G0060 Punica granatum HOM05D001860 ORTHO05D004239 1.4e-13 80.9 244 33.6
Medtr5g041750 Medicago truncatula HOM05D001860 ORTHO05D004239 9.1e-13 78.2 270 30.4
Psat2g116800 Pisum sativum HOM05D001860 ORTHO05D004239 9.1e-13 78.2 276 29.7
Lsat_1_v5_gn_3_52060 Lactuca sativa HOM05D001860 ORTHO05D004239 1.6e-12 77.4 231 32.0
arahy.Tifrunner.gnm1.ann1.A2Z21V Arachis hypogaea HOM05D001860 ORTHO05D004239 1.0e-11 74.7 194 32.5
Migut.L01274 Erythranthe guttata HOM05D001860 ORTHO05D004239 2.2e-11 73.6 71 56.3
ECA233G2043 Erigeron canadensis HOM05D001860 ORTHO05D004239 2.9e-11 73.2 255 30.2
arahy.Tifrunner.gnm1.ann1.RS14VD Arachis hypogaea HOM05D001860 ORTHO05D004239 3.8e-11 72.8 70 55.7
SGA_v2.0_scaffold172G38958 Striga asiatica HOM05D001860 ORTHO05D004239 6.5e-11 72.0 71 54.9
Ca_04821_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004239 1.5e-10 70.9 71 53.5
Gohir.D13G076300 Gossypium hirsutum HOM05D001860 ORTHO05D004239 1.5e-10 70.9 243 32.1
Lsat_1_v5_gn_3_52080 Lactuca sativa HOM05D001860 ORTHO05D004239 1.5e-10 70.9 72 51.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.9e-10 70.5 78 53.8
Haze_11993 Corylus avellana HOM05D001860 ORTHO05D004239 2.5e-10 70.1 71 53.5
Nitab4.5_0004623g0030 Nicotiana tabacum HOM05D001860 ORTHO05D004239 2.5e-10 70.1 265 29.1
CANSAT64G2374 Cannabis sativa HOM05D001860 ORTHO05D004239 4.2e-10 69.3 237 32.1
Oeu028274.1 Olea europaea HOM05D001860 ORTHO05D004239 2.1e-09 67.0 259 28.2
Rhsim12G0064500 Rhododendron simsii HOM05D001860 ORTHO05D004239 2.7e-09 66.6 71 50.7
Actinidia33208 Actinidia chinensis HOM05D001860 ORTHO05D004239 4.7e-09 65.9 72 51.4
Dinv34137 Davidia involucrata HOM05D001860 ORTHO05D004239 6.1e-09 65.5 237 29.1
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.1e-09 65.5 72 55.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.1e-09 65.5 72 55.6
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.1e-09 65.5 72 55.6
TWI79G1540 Tripterygium wilfordii HOM05D001860 ORTHO05D004239 6.1e-09 65.5 161 34.8
TPR.G39239 Trifolium pratense HOM05D001860 ORTHO05D004239 8.0e-09 65.1 69 53.6
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.0e-08 64.7 72 54.2
vmacro01266 Vaccinium macrocarpon HOM05D001860 ORTHO05D004239 1.0e-08 64.7 71 49.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.4e-08 64.3 257 29.2
Ah.03g134870 Amaranthus hybridus HOM05D001860 ORTHO05D004239 2.3e-08 63.5 216 29.6
EL10Ac6g13235 Beta vulgaris HOM05D001860 ORTHO05D004239 2.3e-08 63.5 242 29.8
AUR62032809 Chenopodium quinoa HOM05D001860 ORTHO05D004239 3.0e-08 63.2 243 30.9
Glyma.01G050400 Glycine max HOM05D001860 ORTHO05D004239 9.8e-07 58.2 245 26.5
AUR62005815 Chenopodium quinoa HOM05D001860 ORTHO05D004239 1.7e-06 57.4 243 30.9
Glyma.02G109200 Glycine max HOM05D001860 ORTHO05D004239 1.7e-06 57.4 245 26.1
Lj2g0002980 Lotus japonicus HOM05D001860 ORTHO05D004239 1.7e-06 57.4 273 26.4
HanXRQChr08g0210801 Helianthus annuus HOM05D001860 ORTHO05D004239 2.2e-06 57.0 227 27.8
TAR622G0370 Trochodendron aralioides HOM05D001860 ORTHO05D004239 2.2e-06 57.0 273 29.3
Aqoxy3G03435 Aquilegia oxysepala HOM05D001860 ORTHO05D004239 3.7e-06 56.2 249 28.1
Sc11g0002050 Simmondsia chinensis HOM05D001860 ORTHO05D004239 3.7e-06 56.2 238 27.7
Phvul.002G083400 Phaseolus vulgaris HOM05D001860 ORTHO05D004239 6.3e-06 55.5 245 26.5


User provided reference genes

Program Settings