Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25301 Brassica carinata HOM05D011161 ORTHO05D012637 1.6e-180 636.0 322 100.0
BolC5t29929H Brassica oleracea HOM05D011161 ORTHO05D012637 6.0e-143 511.1 259 100.0
C05p11810 Brassica napus HOM05D011161 ORTHO05D012637 3.4e-114 415.6 363 66.1
C07p16110 Brassica napus HOM05D009574 ORTHO05D012637 1.3e-89 334.0 211 81.5
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 1.4e-86 323.9 284 63.4
BcaC01g00855 Brassica carinata HOM05D011161 ORTHO05D015401 1.8e-78 297.0 309 57.0
BcaB01g05981 Brassica carinata HOM05D009574 ORTHO05D012637 2.3e-78 296.6 179 84.9
BcaC01g02105 Brassica carinata HOM05D011161 ORTHO05D012637 4.6e-66 255.8 268 55.6
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.5e-40 170.2 225 43.1
AT2G05642 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 2.8e-39 166.8 296 38.2
C05p29470 Brassica napus HOM05D009574 ORTHO05D000174 3.5e-34 149.8 225 42.2
BolC5t31677H Brassica oleracea HOM05D009574 ORTHO05D000174 3.5e-34 149.8 225 42.2
BcaNung02594 Brassica carinata HOM05D009574 ORTHO05D012637 7.8e-34 148.7 136 54.4
AL1G48730 Arabidopsis lyrata HOM05D000353 ORTHO05D031316 1.9e-32 144.1 212 42.9
C07p39810 Brassica napus HOM05D009574 ORTHO05D000174 4.8e-31 139.4 148 49.3
BcaC03g15564 Brassica carinata HOM05D009574 ORTHO05D000174 6.9e-30 135.6 120 54.2
BolC2t09283H Brassica oleracea HOM05D009574 ORTHO05D000174 2.6e-29 133.7 223 39.5
BolC9t56585H Brassica oleracea HOM05D009574 ORTHO05D012637 8.4e-28 128.6 354 33.6
BolC7t44510H Brassica oleracea HOM05D009574 ORTHO05D012637 4.6e-26 122.9 113 54.0
BcaB07g32682 Brassica carinata HOM05D009574 ORTHO05D012637 4.8e-23 112.8 238 37.0
BcaC01g01009 Brassica carinata HOM05D009574 ORTHO05D012637 2.2e-20 104.0 144 43.1
BolC9t53564H Brassica oleracea HOM05D011161 ORTHO05D012637 4.9e-20 102.8 139 51.1
BolC9t58388H Brassica oleracea HOM05D011161 ORTHO05D012637 1.1e-19 101.7 106 59.4
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 9.3e-19 98.6 249 31.7
BolC5t33123H Brassica oleracea HOM05D000353 ORTHO05D015401 1.2e-18 98.2 116 49.1
BNapus_Darmor_BZH_scaffold_278p00060 Brassica napus HOM05D009574 ORTHO05D012637 7.9e-18 95.5 176 40.9
C09p55270 Brassica napus HOM05D011161 ORTHO05D012637 8.7e-17 92.0 89 62.9
A03p34040 Brassica napus HOM05D011161 ORTHO05D012637 1.1e-16 91.7 139 47.5
BcaB01g05982 Brassica carinata HOM05D000353 ORTHO05D000174 9.6e-16 88.6 50 90.0
BcaC04g23618 Brassica carinata HOM05D011161 ORTHO05D012637 2.4e-14 84.0 73 67.1
C07p32410 Brassica napus HOM05D011161 ORTHO05D026813 6.9e-14 82.4 51 80.4
BolC9t57731H Brassica oleracea HOM05D011161 ORTHO05D026813 6.9e-14 82.4 51 80.4
BcaC04g20239 Brassica carinata HOM05D011161 ORTHO05D015401 9.0e-14 82.0 70 64.3
BcaB07g32743 Brassica carinata HOM05D000353 ORTHO05D000174 2.0e-13 80.9 50 78.0
BcaC04g19483 Brassica carinata HOM05D011161 ORTHO05D012637 1.0e-12 78.6 73 65.8
C09p55280 Brassica napus HOM05D011161 ORTHO05D012637 1.3e-12 78.2 50 76.0
HanXRQChr04g0101601 Helianthus annuus HOM05D003964 ORTHO05D000174 2.2e-12 77.4 158 29.7
C09p48830 Brassica napus HOM05D011161 ORTHO05D026813 1.9e-11 74.3 56 71.4
HanXRQChr03g0062081 Helianthus annuus HOM05D003964 ORTHO05D000174 9.3e-11 72.0 112 32.1
HanXRQChr13g0398071 Helianthus annuus HOM05D003964 ORTHO05D000174 9.3e-11 72.0 112 32.1
HanXRQChr05g0145471 Helianthus annuus HOM05D003964 ORTHO05D000174 1.2e-10 71.6 112 32.1
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-10 70.9 172 32.0
HanXRQChr01g0015091 Helianthus annuus HOM05D003964 ORTHO05D000174 2.1e-10 70.9 112 32.1
HanXRQChr15g0487781 Helianthus annuus HOM05D003964 ORTHO05D000174 3.5e-10 70.1 161 28.6
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 1.3e-09 68.2 180 30.6
BcaB08g34954 Brassica carinata HOM05D000353 ORTHO05D000174 1.3e-09 68.2 255 28.2
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 1.3e-09 68.2 115 33.0
HanXRQChr05g0160951 Helianthus annuus HOM05D003964 ORTHO05D000174 3.0e-09 67.0 154 29.9
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 3.9e-09 66.6 115 32.2
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 3.9e-09 66.6 115 32.2
HanXRQChr01g0021371 Helianthus annuus HOM05D003964 ORTHO05D000174 6.7e-09 65.9 154 29.9
HanXRQChr07g0205571 Helianthus annuus HOM05D003964 ORTHO05D000174 6.7e-09 65.9 158 26.6
PGSC0003DMG400007030 Solanum tuberosum HOM05D002441 ORTHO05D002513 6.7e-09 65.9 117 34.2
ECA248G0798 Erigeron canadensis HOM05D003964 ORTHO05D000174 8.7e-09 65.5 150 28.0
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 8.7e-09 65.5 189 22.8
HanXRQChr01g0013421 Helianthus annuus HOM05D003964 ORTHO05D000174 1.1e-08 65.1 148 30.4
HanXRQChr05g0155711 Helianthus annuus HOM05D003964 ORTHO05D000174 1.9e-08 64.3 148 30.4
HanXRQChr08g0219171 Helianthus annuus HOM05D003964 ORTHO05D000174 1.9e-08 64.3 112 30.4
HanXRQChr15g0490181 Helianthus annuus HOM05D003964 ORTHO05D000174 1.9e-08 64.3 104 34.6
HanXRQChr16g0520611 Helianthus annuus HOM05D000096 ORTHO05D000045 1.9e-08 64.3 95 36.8
HanXRQChr17g0567981 Helianthus annuus HOM05D003964 ORTHO05D000174 1.9e-08 64.3 159 25.8
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 1.9e-08 64.3 108 26.9
C07p32420 Brassica napus HOM05D009574 ORTHO05D015401 2.5e-08 63.9 36 72.2
HanXRQChr09g0254941 Helianthus annuus HOM05D003964 ORTHO05D000174 2.5e-08 63.9 215 27.4
HanXRQChr13g0387501 Helianthus annuus HOM05D003964 ORTHO05D000174 2.5e-08 63.9 226 25.7
HanXRQChr17g0554621 Helianthus annuus HOM05D003964 ORTHO05D000174 2.5e-08 63.9 90 38.9
Nitab4.5_0000970g0060 Nicotiana tabacum HOM05D002441 ORTHO05D002376 2.5e-08 63.9 304 24.0
C06p53880 Brassica napus HOM05D000313 ORTHO05D000065 3.3e-08 63.5 98 30.6
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 3.3e-08 63.5 198 26.8
Phvul.L003637 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 3.3e-08 63.5 102 34.3
BcaC03g14374 Brassica carinata HOM05D000305 ORTHO05D000065 4.3e-08 63.2 98 30.6
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.3e-08 63.2 155 27.1
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 4.3e-08 63.2 115 29.6
BolC9t57730H Brassica oleracea HOM05D009574 ORTHO05D015401 5.7e-08 62.8 36 69.4
HanXRQChr08g0230241 Helianthus annuus HOM05D003964 ORTHO05D000174 5.7e-08 62.8 147 30.6
TPR.G17919 Trifolium pratense HOM05D011527 ORTHO05D009491 5.7e-08 62.8 199 22.1
Ah.08g214270 Amaranthus hybridus HOM05D003964 ORTHO05D000174 7.4e-08 62.4 159 28.9
TPR.G35040 Trifolium pratense HOM05D011524 ORTHO05D009491 7.4e-08 62.4 114 27.2
arahy.Tifrunner.gnm1.ann1.SFEY24 Arachis hypogaea HOM05D000353 ORTHO05D000174 9.6e-08 62.0 225 26.2
Nitab4.5_0026419g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 9.6e-08 62.0 195 29.2
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 9.6e-08 62.0 115 29.6
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 9.6e-08 62.0 226 26.5
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 9.6e-08 62.0 271 26.2
arahy.Tifrunner.gnm1.ann1.8R9H6F Arachis hypogaea HOM05D002441 ORTHO05D002376 1.3e-07 61.6 154 28.6
Lj1g0026764 Lotus japonicus HOM05D029886 ORTHO05D030008 1.3e-07 61.6 117 34.2
arahy.Tifrunner.gnm1.ann1.18WZIV Arachis hypogaea HOM05D002441 ORTHO05D002376 1.6e-07 61.2 132 29.5
ECA240G4108 Erigeron canadensis HOM05D003964 ORTHO05D002376 1.6e-07 61.2 123 27.6
ECA238G2764 Erigeron canadensis HOM05D003964 ORTHO05D002376 2.1e-07 60.8 95 31.6
HanXRQChr02g0039491 Helianthus annuus HOM05D003964 ORTHO05D002376 2.1e-07 60.8 134 32.8
HanXRQChr06g0179651 Helianthus annuus HOM05D003964 ORTHO05D000174 2.1e-07 60.8 147 30.6
LjContig00155g0001945 Lotus japonicus HOM05D000353 ORTHO05D000174 2.1e-07 60.8 112 25.0
Phvul.008G122133 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 2.1e-07 60.8 205 24.9
Ah.08g210030 Amaranthus hybridus HOM05D002441 ORTHO05D002376 2.8e-07 60.5 175 30.3
C03p87220 Brassica napus HOM05D009574 ORTHO05D012637 2.8e-07 60.5 226 27.0
ECA238G1979 Erigeron canadensis HOM05D003964 ORTHO05D000174 2.8e-07 60.5 182 29.7
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.8e-07 60.5 154 27.9
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 2.8e-07 60.5 205 26.8
BcaB06g27107 Brassica carinata HOM05D000353 ORTHO05D000174 4.8e-07 59.7 134 27.6
A09p28970 Brassica napus HOM05D000353 ORTHO05D000174 4.8e-07 59.7 240 25.4
BraA09t40035Z Brassica rapa HOM05D000313 ORTHO05D000065 4.8e-07 59.7 105 30.5
Peaxi162Scf11584g00003 Petunia axillaris HOM05D002441 ORTHO05D002376 4.8e-07 59.7 194 28.4
TPR.G19823 Trifolium pratense HOM05D011527 ORTHO05D009491 4.8e-07 59.7 202 23.3
Ah.02g127010 Amaranthus hybridus HOM05D000012 ORTHO05D001936 6.3e-07 59.3 118 32.2
BcaC05g27207 Brassica carinata HOM05D000353 ORTHO05D000174 6.3e-07 59.3 147 27.2
BolC5t31838H Brassica oleracea HOM05D000353 ORTHO05D000174 6.3e-07 59.3 147 27.2
ECA248G0780 Erigeron canadensis HOM05D000353 ORTHO05D000174 6.3e-07 59.3 111 31.5
Lsat_1_v5_gn_6_53641 Lactuca sativa HOM05D009063 ORTHO05D011082 6.3e-07 59.3 188 28.2
Phvul.001G105000 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 6.3e-07 59.3 115 34.8
ECA246G2956 Erigeron canadensis HOM05D000353 ORTHO05D000174 8.2e-07 58.9 95 30.5
Nitab4.5_0002025g0040 Nicotiana tabacum HOM05D002441 ORTHO05D002376 8.2e-07 58.9 107 35.5
TWI39G0069 Tripterygium wilfordii HOM05D002907 ORTHO05D005554 8.2e-07 58.9 153 30.7
arahy.Tifrunner.gnm1.ann1.U768Z5 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.1e-06 58.5 130 28.5
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.1e-06 58.5 191 26.7
HanXRQChr09g0240161 Helianthus annuus HOM05D003964 ORTHO05D000174 1.1e-06 58.5 120 32.5
Nitab4.5_0004863g0020 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.1e-06 58.5 154 27.9
Nitab4.5_0000928g0130 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.4e-06 58.2 96 38.5
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 1.4e-06 58.2 167 26.9
BcaB05g24149 Brassica carinata HOM05D000313 ORTHO05D000065 1.8e-06 57.8 137 29.2
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.8e-06 57.8 135 33.3
Thhalv10000499m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.8e-06 57.8 116 24.1
Lj3g0016345 Lotus japonicus HOM05D000353 ORTHO05D000174 1.8e-06 57.8 155 26.5
Nitab4.5_0003787g0030 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.8e-06 57.8 110 33.6
Nitab4.5_0015899g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.8e-06 57.8 96 36.5
C04p53440 Brassica napus HOM05D000313 ORTHO05D000065 2.4e-06 57.4 105 29.5
BolC4t26899H Brassica oleracea HOM05D000313 ORTHO05D000065 2.4e-06 57.4 105 29.5
ECA248G2045 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.4e-06 57.4 62 45.2
BcaC04g19486 Brassica carinata HOM05D000313 ORTHO05D000065 3.1e-06 57.0 117 26.5
C09p55230 Brassica napus HOM05D000313 ORTHO05D000065 3.1e-06 57.0 117 26.5
DCAR_031592 Daucus carota HOM05D002907 ORTHO05D000065 3.1e-06 57.0 101 31.7
Nitab4.5_0000992g0110 Nicotiana tabacum HOM05D002441 ORTHO05D002376 3.1e-06 57.0 217 25.8
arahy.Tifrunner.gnm1.ann1.U0JAJ0 Arachis hypogaea HOM05D002441 ORTHO05D002376 4.1e-06 56.6 152 28.3
A05p27520 Brassica napus HOM05D000353 ORTHO05D000174 4.1e-06 56.6 203 28.6
C03p18660 Brassica napus HOM05D000353 ORTHO05D000174 4.1e-06 56.6 194 27.3
BraA09t38461Z Brassica rapa HOM05D000353 ORTHO05D000174 4.1e-06 56.6 259 24.7
ECA233G0025 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.1e-06 56.6 144 33.3
HanXRQChr13g0403861 Helianthus annuus HOM05D003964 ORTHO05D000174 4.1e-06 56.6 139 28.1
HanXRQChr14g0436911 Helianthus annuus HOM05D003964 ORTHO05D000174 4.1e-06 56.6 139 28.1
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 4.1e-06 56.6 114 28.9
Lj3g0020532 Lotus japonicus HOM05D031098 ORTHO05D015701 4.1e-06 56.6 141 24.8
Peaxi162Scf00385g00619 Petunia axillaris HOM05D002441 ORTHO05D002376 4.1e-06 56.6 200 27.0
TPR.G15524 Trifolium pratense HOM05D007499 ORTHO05D009491 4.1e-06 56.6 116 26.7
arahy.Tifrunner.gnm1.ann1.GFA6QK Arachis hypogaea HOM05D007499 ORTHO05D009491 5.3e-06 56.2 119 28.6
BcaC02g09046 Brassica carinata HOM05D000353 ORTHO05D000174 5.3e-06 56.2 200 26.5
BcaC03g15185 Brassica carinata HOM05D000096 ORTHO05D010037 5.3e-06 56.2 109 33.9
C04p57270 Brassica napus HOM05D011161 ORTHO05D012637 5.3e-06 56.2 45 66.7
BraA09t38616Z Brassica rapa HOM05D000305 ORTHO05D000065 5.3e-06 56.2 143 27.3
CARHR152820 Cardamine hirsuta HOM05D000305 ORTHO05D000065 5.3e-06 56.2 108 34.3
ECA233G1381 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.3e-06 56.2 115 29.6
ECA234G0608 Erigeron canadensis HOM05D000615 ORTHO05D000447 5.3e-06 56.2 109 32.1
ECA247G4094 Erigeron canadensis HOM05D000353 ORTHO05D000174 5.3e-06 56.2 200 25.0
Thhalv10029348m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 5.3e-06 56.2 116 23.3
HanXRQChr13g0392821 Helianthus annuus HOM05D003964 ORTHO05D000174 5.3e-06 56.2 111 32.4
Lj3g0021994 Lotus japonicus HOM05D002090 ORTHO05D001923 5.3e-06 56.2 194 26.8
Medtr8g062030 Medicago truncatula HOM05D000353 ORTHO05D000174 5.3e-06 56.2 115 27.0
Phvul.006G016100 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 5.3e-06 56.2 163 26.4
Phvul.006G191400 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 5.3e-06 56.2 166 28.9
QL01p044581 Quercus lobata HOM05D002907 ORTHO05D005554 5.3e-06 56.2 165 27.9
QL01p044591 Quercus lobata HOM05D002907 ORTHO05D005554 5.3e-06 56.2 165 27.9
TPR.G26714 Trifolium pratense HOM05D011524 ORTHO05D009491 5.3e-06 56.2 202 22.3
AL2G18740 Arabidopsis lyrata HOM05D009574 ORTHO05D026813 6.9e-06 55.8 50 50.0
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 6.9e-06 55.8 199 27.6
C03p68040 Brassica napus HOM05D000313 ORTHO05D000065 6.9e-06 55.8 112 27.7
BolC3t19028H Brassica oleracea HOM05D000313 ORTHO05D000065 6.9e-06 55.8 112 27.7
BolC8t47319H Brassica oleracea HOM05D000353 ORTHO05D000174 6.9e-06 55.8 147 25.9
DCAR_011057 Daucus carota HOM05D002907 ORTHO05D000065 6.9e-06 55.8 120 26.7
ECA232G3959 Erigeron canadensis HOM05D000096 ORTHO05D000045 6.9e-06 55.8 94 29.8
Lsat_1_v5_gn_6_7341 Lactuca sativa HOM05D009063 ORTHO05D011082 6.9e-06 55.8 119 29.4
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 6.9e-06 55.8 95 28.4
Medtr4g032565 Medicago truncatula HOM05D002441 ORTHO05D002376 6.9e-06 55.8 153 28.1
arahy.Tifrunner.gnm1.ann1.CT1CGZ Arachis hypogaea HOM05D007499 ORTHO05D009491 9.0e-06 55.5 119 28.6
BcaC03g14692 Brassica carinata HOM05D000313 ORTHO05D000065 9.0e-06 55.5 100 26.0
BcaC04g22409 Brassica carinata HOM05D005044 ORTHO05D000065 9.0e-06 55.5 100 26.0
BraA05t19978Z Brassica rapa HOM05D000313 ORTHO05D000065 9.0e-06 55.5 117 27.4
Lsat_1_v5_gn_3_131701 Lactuca sativa HOM05D009063 ORTHO05D011082 9.0e-06 55.5 189 25.4
Medtr4g032585 Medicago truncatula HOM05D000353 ORTHO05D002376 9.0e-06 55.5 153 28.1
Peaxi162Scf00103g00815 Petunia axillaris HOM05D002441 ORTHO05D002376 9.0e-06 55.5 193 28.0
Peaxi162Scf00347g00918 Petunia axillaris HOM05D002441 ORTHO05D002376 9.0e-06 55.5 193 28.0


User provided reference genes

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