Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 2.1e-138 495.7 256 100.0
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 5.3e-126 454.5 293 84.3
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 3.3e-120 435.3 256 90.2
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 1.9e-115 419.5 307 77.2
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 1.6e-114 416.4 278 82.4
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 3.9e-113 411.8 277 81.6
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 2.8e-111 405.6 277 80.5
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 2.2e-108 396.0 278 79.9
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 1.4e-102 376.7 280 74.3
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 4.5e-101 371.7 313 70.3
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 1.5e-99 366.7 317 66.6
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 9.5e-91 337.4 271 69.4
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 5.8e-80 301.6 191 79.6
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 9.8e-80 300.8 190 80.5
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 1.7e-79 300.1 288 60.8
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 6.4e-79 298.1 298 60.4
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 1.1e-78 297.4 289 61.2
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 1.1e-78 297.4 282 61.0
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 2.7e-77 292.7 272 61.0
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 3.5e-77 292.4 292 59.2
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 3.5e-77 292.4 195 76.4
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 4.6e-77 292.0 195 75.4
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 1.7e-76 290.0 190 77.9
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 2.3e-76 289.7 190 77.9
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 6.6e-76 288.1 190 77.4
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.1e-75 287.3 285 58.2
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 1.5e-75 287.0 280 59.3
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 1.5e-75 287.0 191 74.9
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.9e-75 286.6 280 59.6
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 2.5e-75 286.2 280 59.6
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.5e-75 286.2 280 60.0
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 2.5e-75 286.2 286 58.4
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 3.3e-75 285.8 269 60.6
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 4.3e-75 285.4 248 63.7
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 9.5e-75 284.3 288 58.0
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 9.5e-75 284.3 192 75.0
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 9.5e-75 284.3 187 77.0
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 1.2e-74 283.9 290 58.3
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 1.6e-74 283.5 249 63.9
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.6e-74 283.5 284 56.3
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 2.1e-74 283.1 192 72.9
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 2.1e-74 283.1 192 72.9
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 2.1e-74 283.1 277 58.8
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 3.6e-74 282.3 291 56.7
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 3.6e-74 282.3 291 56.7
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 3.6e-74 282.3 278 59.7
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 8.0e-74 281.2 276 59.1
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 1.1e-73 280.8 191 72.8
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 1.1e-73 280.8 264 60.2
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 1.4e-73 280.4 286 56.6
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 1.4e-73 280.4 188 73.9
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 1.4e-73 280.4 281 59.1
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 2.3e-73 279.6 284 58.5
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 2.3e-73 279.6 191 72.3
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 2.3e-73 279.6 282 58.9
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 2.3e-73 279.6 247 62.8
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 2.3e-73 279.6 282 55.7
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 3.1e-73 279.3 191 73.3
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 5.2e-73 278.5 192 72.4
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 5.2e-73 278.5 267 59.6
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 5.2e-73 278.5 281 57.7
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 6.8e-73 278.1 195 73.3
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.5e-72 276.9 304 56.2
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 1.5e-72 276.9 280 58.9
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 1.5e-72 276.9 273 57.1
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 4.4e-72 275.4 228 65.8
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 5.8e-72 275.0 199 71.4
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 9.8e-72 274.2 277 56.7
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 1.3e-71 273.9 188 72.3
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 2.2e-71 273.1 195 69.2
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.7e-71 272.3 191 70.7
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 4.9e-71 271.9 271 56.1
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 4.9e-71 271.9 195 73.8
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 4.9e-71 271.9 269 59.1
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 6.4e-71 271.6 190 68.9
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 8.3e-71 271.2 290 57.6
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 8.3e-71 271.2 268 57.8
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 1.1e-70 270.8 265 58.5
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 1.4e-70 270.4 278 56.1
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 2.1e-69 266.5 260 58.5
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 1.9e-67 260.0 192 64.6
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 9.5e-67 257.7 192 67.2
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 9.5e-67 257.7 369 46.6
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 2.8e-66 256.1 277 55.2
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 1.4e-65 253.8 407 43.5
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 6.8e-65 251.5 192 65.6
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 2.9e-63 246.1 261 57.1
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 3.7e-63 245.7 348 46.0
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 1.9e-62 243.4 187 64.2
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 1.9e-62 243.4 190 64.7
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 9.2e-62 241.1 212 60.4
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 6.6e-60 235.0 202 58.9
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 4.7e-58 228.8 263 52.1
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.1e-57 226.1 265 51.7
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 7.6e-56 221.5 241 53.9
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 2.2e-55 219.9 250 54.8
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 5.4e-54 215.3 146 73.3
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 2.3e-44 183.3 155 64.5
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 5.1e-44 182.2 205 51.7
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 6.6e-44 181.8 215 47.9
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 8.1e-42 174.9 244 48.0
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 6.9e-41 171.8 201 54.2
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 2.6e-40 169.9 135 68.9
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 7.6e-40 168.3 125 69.6
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 2.1e-34 150.2 87 81.6
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 5.5e-30 135.6 130 53.8
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 7.1e-30 135.2 96 68.8
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 2.5e-27 126.7 307 33.2
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.2e-21 107.8 77 66.2
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 4.3e-19 99.4 96 58.3
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 4.1e-17 92.8 73 61.6
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 1.1e-14 84.7 133 41.4
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 5.1e-12 75.9 189 32.8
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 9.1e-09 65.1 204 27.5
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 3.4e-08 63.2 41 68.3
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.3e-07 61.2 40 67.5
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.9e-07 60.1 120 35.8
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.1e-06 58.2 46 63.0
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 2.5e-06 57.0 37 64.9
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 3.2e-06 56.6 41 61.0
Nn2g11199 Nelumbo nucifera HOM05D006796 ORTHO05D008615 5.5e-06 55.8 55 54.5


User provided reference genes

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