Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 9.3e-150 533.9 347 100.0
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 1.5e-123 446.8 360 86.9
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 1.5e-123 446.8 360 86.9
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 2.2e-122 443.0 360 86.4
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 4.1e-121 438.7 355 86.8
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.1e-117 426.4 366 82.2
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 1.8e-116 423.3 365 82.2
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 4.1e-105 385.6 365 76.4
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 1.1e-102 377.5 367 77.4
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 3.3e-94 349.4 346 76.3
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 4.6e-88 328.9 368 72.0
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.5e-59 234.2 222 62.2
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 2.9e-50 203.4 219 53.4
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 1.1e-30 138.3 156 51.3
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 1.8e-28 131.0 141 51.1
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 5.9e-27 125.9 160 46.9
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 1.9e-25 120.9 170 42.9
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 2.5e-25 120.6 163 46.0
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 3.2e-25 120.2 203 37.9
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 4.2e-25 119.8 153 46.4
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 7.2e-25 119.0 145 44.8
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 1.2e-24 118.2 134 50.0
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.7e-24 117.1 178 41.6
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 6.1e-24 115.9 139 48.9
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 6.1e-24 115.9 139 48.9
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 1.8e-23 114.4 145 44.8
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 3.0e-23 113.6 159 43.4
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 3.9e-23 113.2 165 41.8
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 5.1e-23 112.8 149 43.0
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 8.8e-23 112.1 145 42.1
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.1e-22 111.7 133 47.4
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 2.5e-22 110.5 131 48.1
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 2.5e-22 110.5 131 48.1
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 7.4e-22 109.0 170 38.2
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.3e-21 108.2 148 41.9
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.7e-21 107.8 212 35.4
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.7e-21 107.8 170 40.0
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 2.8e-21 107.1 164 40.9
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 4.8e-21 106.3 163 40.5
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 8.2e-21 105.5 152 40.8
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.8e-20 104.4 163 40.5
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.8e-20 104.4 141 44.0
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 2.4e-20 104.0 127 46.5
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 5.3e-20 102.8 158 43.0
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 6.9e-20 102.4 173 39.9
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 2.0e-19 100.9 180 38.3
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 3.4e-19 100.1 173 35.8
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 4.5e-19 99.8 163 41.7
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 4.5e-19 99.8 177 38.4
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.3e-18 98.2 203 31.5
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.3e-18 98.2 203 31.5
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.3e-18 98.2 155 39.4
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 2.2e-18 97.4 164 36.0
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 2.2e-18 97.4 134 41.0
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 5.0e-18 96.3 147 38.1
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 5.0e-18 96.3 138 42.8
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.4e-17 94.7 146 39.7
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 1.9e-17 94.4 173 37.0
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 3.2e-17 93.6 135 43.0
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 3.2e-17 93.6 139 44.6
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 4.2e-17 93.2 224 32.6
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 9.4e-17 92.0 164 36.0
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 9.4e-17 92.0 172 34.9
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 9.4e-17 92.0 173 38.2
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 1.2e-16 91.7 132 45.5
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.2e-16 91.7 146 37.7
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 1.6e-16 91.3 138 38.4
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 2.1e-16 90.9 160 37.5
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 3.6e-16 90.1 167 35.3
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 3.6e-16 90.1 147 42.9
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 1.0e-15 88.6 173 37.6
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 3.0e-15 87.0 130 40.0
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 3.9e-15 86.7 158 33.5
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 2.0e-14 84.3 187 34.2
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 2.6e-14 84.0 132 38.6
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 1.7e-13 81.3 164 37.8
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 2.2e-13 80.9 175 35.4
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 8.2e-13 79.0 158 31.0
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 1.4e-12 78.2 175 32.6
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 5.3e-12 76.3 131 36.6
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.5e-11 74.7 134 35.1
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.0e-10 72.0 107 38.3
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 5.0e-10 69.7 125 35.2
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 6.5e-10 69.3 159 31.4
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 6.5e-10 69.3 139 30.9
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 2.5e-09 67.4 114 34.2
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 2.5e-09 67.4 158 31.0
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 5.5e-09 66.2 80 46.2
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 4.0e-07 60.1 99 37.4


User provided reference genes

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