Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25123 Brassica carinata HOM05D001461 ORTHO05D002801 1.7e-48 195.7 96 100.0
BcaB07g30070 Brassica carinata HOM05D001461 ORTHO05D002801 4.4e-41 171.0 86 96.5
A09p14160 Brassica napus HOM05D001461 ORTHO05D002801 1.7e-29 132.5 79 87.3
BraA09t37064Z Brassica rapa HOM05D001461 ORTHO05D002801 1.7e-29 132.5 79 87.3
BcaB07g31522 Brassica carinata HOM05D001461 ORTHO05D002801 8.6e-29 130.2 73 90.4
BcaC04g22647 Brassica carinata HOM05D001461 ORTHO05D002801 2.8e-27 125.2 79 83.5
C09p17070 Brassica napus HOM05D001461 ORTHO05D002801 2.8e-27 125.2 79 83.5
BolC9t54605H Brassica oleracea HOM05D001461 ORTHO05D002801 2.8e-27 125.2 79 83.5
Carub.0002s0063 Capsella rubella HOM05D001461 ORTHO05D002801 3.0e-21 105.1 82 70.7
CARHR046760 Cardamine hirsuta HOM05D001461 ORTHO05D002801 5.6e-20 100.9 83 67.5
AL2G10840 Arabidopsis lyrata HOM05D001461 ORTHO05D002801 4.0e-18 94.7 82 67.1
THA.LOC104809347 Tarenaya hassleriana HOM05D001461 ORTHO05D002801 1.5e-17 92.8 82 63.4
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 4.4e-17 91.3 83 65.1
Thhalv10023367m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 7.6e-17 90.5 81 67.9
BcaC02g08944 Brassica carinata HOM05D001461 ORTHO05D002801 9.9e-17 90.1 82 63.4
BolC4t26456H Brassica oleracea HOM05D001461 ORTHO05D002801 9.9e-17 90.1 82 63.4
A04p14720 Brassica napus HOM05D001461 ORTHO05D002801 1.3e-16 89.7 82 64.6
BraA04t17112Z Brassica rapa HOM05D001461 ORTHO05D002801 1.3e-16 89.7 82 64.6
BcaB06g27636 Brassica carinata HOM05D001461 ORTHO05D002801 1.7e-16 89.4 82 65.9
BcaB06g27641 Brassica carinata HOM05D001461 ORTHO05D002801 2.9e-16 88.6 82 63.4
C04p48610 Brassica napus HOM05D001461 ORTHO05D002801 2.9e-16 88.6 82 63.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 4.9e-16 87.8 82 63.4
THA.LOC104817743 Tarenaya hassleriana HOM05D001461 ORTHO05D002801 8.3e-16 87.0 82 63.4
CARHR212870 Cardamine hirsuta HOM05D001461 ORTHO05D002801 1.9e-15 85.9 82 63.4
EL10Ac5g12861 Beta vulgaris HOM05D001461 ORTHO05D002801 3.2e-15 85.1 82 61.0
Carub.0007s3384 Capsella rubella HOM05D001461 ORTHO05D002801 4.1e-15 84.7 82 61.0
Sp2g00550 Schrenkiella parvula HOM05D001461 ORTHO05D002801 7.1e-15 84.0 76 67.1
AL7G47760 Arabidopsis lyrata HOM05D001461 ORTHO05D002801 9.2e-15 83.6 82 61.0
AUR62010788 Chenopodium quinoa HOM05D001461 ORTHO05D002801 1.2e-14 83.2 82 61.0
AUR62019784 Chenopodium quinoa HOM05D001461 ORTHO05D002801 1.6e-14 82.8 82 61.0
Ah.12g052170 Amaranthus hybridus HOM05D001461 ORTHO05D002801 2.1e-14 82.4 82 61.0
Duzib084G1414 Durio zibethinus HOM05D001461 ORTHO05D002801 6.0e-14 80.9 82 58.5
Thecc.03G290400 Theobroma cacao HOM05D001461 ORTHO05D002801 7.8e-14 80.5 82 58.5
COL.COLO4_21751 Corchorus olitorius HOM05D001461 ORTHO05D002801 1.0e-13 80.1 82 58.5
Duzib068G0549 Durio zibethinus HOM05D001461 ORTHO05D002801 1.0e-13 80.1 82 57.3
AT1G64180 Arabidopsis thaliana HOM05D001461 ORTHO05D002801 1.3e-13 79.7 76 61.8
Gohir.A12G232520 Gossypium hirsutum HOM05D001461 ORTHO05D002801 2.3e-13 79.0 82 57.3
Gohir.D12G235200 Gossypium hirsutum HOM05D001461 ORTHO05D002801 2.3e-13 79.0 82 57.3
Gorai.008G251400 Gossypium raimondii HOM05D001461 ORTHO05D002801 2.3e-13 79.0 82 57.3
Duzib205G0346 Durio zibethinus HOM05D001461 ORTHO05D002801 3.0e-13 78.6 82 56.1
TWI15G0184 Tripterygium wilfordii HOM05D001461 ORTHO05D002801 3.9e-13 78.2 82 58.5
Gohir.D08G133400 Gossypium hirsutum HOM05D001461 ORTHO05D002801 8.6e-13 77.0 81 56.8
CiPaw.11G126200 Carya illinoinensis HOM05D001461 ORTHO05D002801 1.1e-12 76.6 82 58.5
Cpa.g.sc122.17 Carica papaya HOM05D001461 ORTHO05D002801 2.5e-12 75.5 82 57.3
Lsat_1_v5_gn_3_9661 Lactuca sativa HOM05D001461 ORTHO05D002801 3.3e-12 75.1 83 56.6
Cfa012280 Carpinus fangiana HOM05D001461 ORTHO05D002801 4.3e-12 74.7 82 56.1
Ca_24528_v3 Cicer arietinum L. HOM05D001461 ORTHO05D002801 4.3e-12 74.7 82 56.1
Psat2g184280 Pisum sativum HOM05D001461 ORTHO05D002801 4.3e-12 74.7 88 51.1
SalBow1G7989 Salvia bowleyana HOM05D001461 ORTHO05D002801 4.3e-12 74.7 82 52.4
Eucgr.D01786 Eucalyptus grandis HOM05D001461 ORTHO05D002801 5.6e-12 74.3 82 54.9
MD06G1098100 Malus domestica HOM05D001461 ORTHO05D002801 5.6e-12 74.3 85 55.3
Sp7g00420 Schrenkiella parvula HOM05D001461 ORTHO05D002801 5.6e-12 74.3 73 63.0
Sed0019429 Sechium edule HOM05D001461 ORTHO05D002801 5.6e-12 74.3 81 54.3
Ah.05g179980 Amaranthus hybridus HOM05D001461 ORTHO05D002801 7.3e-12 73.9 80 53.8
CANSAT21G2284 Cannabis sativa HOM05D001461 ORTHO05D002801 7.3e-12 73.9 83 56.6
CiPaw.12G086800 Carya illinoinensis HOM05D001461 ORTHO05D002801 7.3e-12 73.9 82 54.9
Nn7g37348 Nelumbo nucifera HOM05D001461 ORTHO05D002801 9.6e-12 73.6 82 56.1
PGSC0003DMG400012313 Solanum tuberosum HOM05D001461 ORTHO05D002801 9.6e-12 73.6 82 52.4
TPR.G6700 Trifolium pratense HOM05D001461 ORTHO05D002801 9.6e-12 73.6 82 54.9
Medtr5g009750 Medicago truncatula HOM05D001461 ORTHO05D002801 1.2e-11 73.2 82 54.9
Peaxi162Scf00074g01418 Petunia axillaris HOM05D001461 ORTHO05D002801 1.2e-11 73.2 82 52.4
Sopen08g030120 Solanum pennellii HOM05D001461 ORTHO05D002801 1.2e-11 73.2 82 52.4
MSTRG.25649 Avicennia marina HOM05D001461 ORTHO05D002801 1.6e-11 72.8 82 50.0
EL10Ac1g00328 Beta vulgaris HOM05D001461 ORTHO05D002801 1.6e-11 72.8 80 55.0
Potri.003G135000 Populus trichocarpa HOM05D001461 ORTHO05D002801 1.6e-11 72.8 82 53.7
Solyc08g081830.3 Solanum lycopersicum HOM05D001461 ORTHO05D002801 1.6e-11 72.8 82 52.4
Lj3A338T40 Lonicera japonica HOM05D001461 ORTHO05D002801 2.1e-11 72.4 93 50.5
Lj7A505T29 Lonicera japonica HOM05D001461 ORTHO05D002801 2.1e-11 72.4 93 50.5
MD00G1094600 Malus domestica HOM05D001461 ORTHO05D002801 2.1e-11 72.4 85 55.3
Nitab4.5_0002564g0050 Nicotiana tabacum HOM05D001461 ORTHO05D002801 2.1e-11 72.4 82 52.4
Oeu063050.1 Olea europaea HOM05D001461 ORTHO05D002801 2.1e-11 72.4 82 52.4
Potri.001G096200 Populus trichocarpa HOM05D001461 ORTHO05D002801 2.1e-11 72.4 82 53.7
RcHm_v2.0_Chr7g0195911 Rosa chinensis HOM05D001461 ORTHO05D002801 2.1e-11 72.4 82 56.1
Sabra01G0072200 Salix brachista HOM05D001461 ORTHO05D002801 2.1e-11 72.4 82 53.7
SGA_v2.0_scaffold173G39117 Striga asiatica HOM05D001461 ORTHO05D002801 2.1e-11 72.4 82 51.2
Thecc.01G349200 Theobroma cacao HOM05D001461 ORTHO05D002801 2.1e-11 72.4 91 51.6
Actinidia04222 Actinidia chinensis HOM05D001461 ORTHO05D002801 2.8e-11 72.0 82 53.7
CAN.G532.61 Capsicum annuum HOM05D001461 ORTHO05D002801 2.8e-11 72.0 82 52.4
FvH4_5g03740 Fragaria vesca HOM05D001461 ORTHO05D002801 2.8e-11 72.0 83 55.4
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.8e-11 72.0 83 55.4
FAN08G1711 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.8e-11 72.0 83 55.4
FAN13G0022 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.8e-11 72.0 83 55.4
FAN13G0326 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.8e-11 72.0 83 55.4
FAN18G4162 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.8e-11 72.0 83 55.4
CSS0021876 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D002801 3.6e-11 71.6 82 54.9
ClCG01G002120 Citrullus lanatus HOM05D001461 ORTHO05D002801 3.6e-11 71.6 81 53.1
Ciclev10019168m.g Citrus clementina HOM05D001461 ORTHO05D002801 3.6e-11 71.6 84 56.0
MELO3C005731.2 Cucumis melo HOM05D001461 ORTHO05D002801 3.6e-11 71.6 81 53.1
CsaV3_5G002240 Cucumis sativus L. HOM05D001461 ORTHO05D002801 3.6e-11 71.6 81 53.1
Nitab4.5_0000223g0010 Nicotiana tabacum HOM05D001461 ORTHO05D002801 3.6e-11 71.6 82 52.4
TAR636G2610 Trochodendron aralioides HOM05D001461 ORTHO05D002801 3.6e-11 71.6 83 53.0
Sc01g0010010 Simmondsia chinensis HOM05D001461 ORTHO05D002801 4.7e-11 71.2 81 54.3
arahy.Tifrunner.gnm1.ann1.2M8W8F Arachis hypogaea HOM05D001461 ORTHO05D002801 6.2e-11 70.9 84 53.6
arahy.Tifrunner.gnm1.ann1.CSBF71 Arachis hypogaea HOM05D001461 ORTHO05D002801 6.2e-11 70.9 84 53.6
TWI81G1025 Tripterygium wilfordii HOM05D001461 ORTHO05D002801 6.2e-11 70.9 82 56.1
TAR629G2645 Trochodendron aralioides HOM05D001461 ORTHO05D002801 6.2e-11 70.9 90 50.0
Cc08_g15570 Coffea canephora HOM05D001461 ORTHO05D002801 8.1e-11 70.5 75 58.7
Duzib133G1464 Durio zibethinus HOM05D001461 ORTHO05D002801 8.1e-11 70.5 82 54.9
QL02p032149 Quercus lobata HOM05D001461 ORTHO05D002801 8.1e-11 70.5 82 54.9
QL10p040340 Quercus lobata HOM05D001461 ORTHO05D002801 8.1e-11 70.5 82 54.9
VMungo1215G2718 Vigna mungo HOM05D001461 ORTHO05D002801 8.1e-11 70.5 82 54.9
MSTRG.11943 Avicennia marina HOM05D001461 ORTHO05D002801 1.1e-10 70.1 82 51.2
Rhsim02G0238800 Rhododendron simsii HOM05D001461 ORTHO05D002801 1.1e-10 70.1 82 53.7
Rhsim07G0008600 Rhododendron simsii HOM05D001461 ORTHO05D002801 1.1e-10 70.1 82 52.4
Sabra03G0097200 Salix brachista HOM05D001461 ORTHO05D002801 1.1e-10 70.1 82 52.4
Ciclev10019237m.g Citrus clementina HOM05D001461 ORTHO05D002801 1.4e-10 69.7 81 53.1
Phvul.002G161700 Phaseolus vulgaris HOM05D001461 ORTHO05D002801 1.4e-10 69.7 82 53.7
Hund14248 Selenicereus undatus HOM05D001461 ORTHO05D002801 1.4e-10 69.7 82 54.9
Lj2C174T8 Lonicera japonica HOM05D001461 ORTHO05D002801 1.8e-10 69.3 82 53.7
Sc01g0003070 Simmondsia chinensis HOM05D001461 ORTHO05D002801 1.8e-10 69.3 80 53.8
DCAR_027744 Daucus carota HOM05D001461 ORTHO05D002801 2.4e-10 68.9 82 50.0
Potri.002G166600 Populus trichocarpa HOM05D001461 ORTHO05D002801 2.4e-10 68.9 89 49.4
Prupe.5G111800 Prunus persica HOM05D001461 ORTHO05D002801 3.1e-10 68.6 85 51.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 3.1e-10 68.6 82 51.2
ECA246G2267 Erigeron canadensis HOM05D001461 ORTHO05D002801 4.0e-10 68.2 83 50.6
MBI07_g06329_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D002801 4.0e-10 68.2 82 52.4
LjContig00312_ERROPOS870357g0013551 Lotus japonicus HOM05D001461 ORTHO05D002801 8.9e-10 67.0 83 49.4
Lalb_Chr05g0211671 Lupinus albus HOM05D001461 ORTHO05D002801 8.9e-10 67.0 82 52.4
Sc23g0002410 Simmondsia chinensis HOM05D001461 ORTHO05D002801 8.9e-10 67.0 77 53.2
Cfa003847 Carpinus fangiana HOM05D001461 ORTHO05D002801 1.2e-09 66.6 82 53.7
AUR62004434 Chenopodium quinoa HOM05D000258 ORTHO05D002801 1.2e-09 66.6 96 46.9
Haze_15603 Corylus avellana HOM05D001461 ORTHO05D002801 1.2e-09 66.6 82 53.7
Dinv32541 Davidia involucrata HOM05D001461 ORTHO05D002801 1.2e-09 66.6 82 50.0
vmacro13210 Vaccinium macrocarpon HOM05D001461 ORTHO05D002801 1.2e-09 66.6 82 51.2
COL.COLO4_06355 Corchorus olitorius HOM05D001461 ORTHO05D002801 1.5e-09 66.2 81 51.9
Glyma.01G223700 Glycine max HOM05D001461 ORTHO05D002801 1.5e-09 66.2 73 57.5
Gohir.D11G098500 Gossypium hirsutum HOM05D001461 ORTHO05D002801 1.5e-09 66.2 81 50.6
Gorai.007G104700 Gossypium raimondii HOM05D001461 ORTHO05D002801 1.5e-09 66.2 81 50.6
GSVIVG01027031001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.5e-09 66.2 73 57.5
vmacro11422 Vaccinium macrocarpon HOM05D001461 ORTHO05D002801 2.0e-09 65.9 82 50.0
Hund16686 Selenicereus undatus HOM05D001461 ORTHO05D002801 2.6e-09 65.5 97 47.4
HanXRQChr17g0535511 Helianthus annuus HOM05D001461 ORTHO05D002801 3.4e-09 65.1 83 51.8
Oeu008835.1 Olea europaea HOM05D001461 ORTHO05D002801 3.4e-09 65.1 82 48.8
Dinv43885 Davidia involucrata HOM05D001461 ORTHO05D002801 4.4e-09 64.7 82 48.8
Migut.A00692 Erythranthe guttata HOM05D001461 ORTHO05D002801 4.4e-09 64.7 84 47.6
CSS0005587 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D002801 5.8e-09 64.3 78 50.0
CSS0041816 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D002801 5.8e-09 64.3 63 55.6
Gohir.A11G093500 Gossypium hirsutum HOM05D001461 ORTHO05D002801 7.6e-09 63.9 81 50.6
HanXRQChr10g0292751 Helianthus annuus HOM05D001461 ORTHO05D002801 9.9e-09 63.5 83 48.2
QL04p057867 Quercus lobata HOM05D001461 ORTHO05D002801 1.3e-08 63.2 82 46.3
Sabra02G0145000 Salix brachista HOM05D001461 ORTHO05D002801 1.3e-08 63.2 87 43.7
MBI06_g04296_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D002801 1.7e-08 62.8 81 48.1
Aa31LG9G430 Aethionema arabicum HOM05D001461 ORTHO05D002801 2.2e-08 62.4 76 52.6
AUR62023514 Chenopodium quinoa HOM05D000258 ORTHO05D000153 2.2e-08 62.4 96 44.8
Lj3g0014894 Lotus japonicus HOM05D001461 ORTHO05D002801 2.2e-08 62.4 82 46.3
Actinidia20184 Actinidia chinensis HOM05D001461 ORTHO05D002801 2.9e-08 62.0 82 48.8
Potri.014G093400 Populus trichocarpa HOM05D001461 ORTHO05D002801 3.8e-08 61.6 88 47.7
Hma1.2p1_0384F.1_g140890 Hydrangea macrophylla HOM05D001461 ORTHO05D002801 4.9e-08 61.2 83 49.4
BcaB06g27638 Brassica carinata HOM05D001461 ORTHO05D002801 6.4e-08 60.8 82 50.0
Glyma.07G061300 Glycine max HOM05D001461 ORTHO05D002801 6.4e-08 60.8 88 44.3
Manes.02G014200 Manihot esculenta HOM05D001461 ORTHO05D002801 6.4e-08 60.8 48 66.7
Actinidia10092 Actinidia chinensis HOM05D001461 ORTHO05D002801 8.4e-08 60.5 82 48.8
MSTRG.17310 Avicennia marina HOM05D001461 ORTHO05D002801 8.4e-08 60.5 83 47.0
Hund27231 Selenicereus undatus HOM05D001461 ORTHO05D002801 1.1e-07 60.1 80 48.8
SGA_v2.0_scaffold4G02267 Striga asiatica HOM05D001461 ORTHO05D002801 1.1e-07 60.1 83 44.6
Gohir.A08G091500 Gossypium hirsutum HOM05D001461 ORTHO05D002801 1.4e-07 59.7 47 66.0
AT5G41620 Arabidopsis thaliana HOM05D001461 ORTHO05D002801 1.9e-07 59.3 48 66.7
Haze_08704 Corylus avellana HOM05D001461 ORTHO05D002801 1.9e-07 59.3 53 62.3
Dinv37564 Davidia involucrata HOM05D001461 ORTHO05D002801 1.9e-07 59.3 56 60.7
PSO135G0588 Papaver somniferum HOM05D001461 ORTHO05D002801 1.9e-07 59.3 84 48.8
Cc02_g38820 Coffea canephora HOM05D001461 ORTHO05D002801 2.4e-07 58.9 81 48.1
Duzib138G1087 Durio zibethinus HOM05D001461 ORTHO05D002801 2.4e-07 58.9 82 47.6
CiPaw.01G070400 Carya illinoinensis HOM05D001461 ORTHO05D002801 3.2e-07 58.5 83 45.8
Nitab4.5_0000305g0310 Nicotiana tabacum HOM05D001461 ORTHO05D002801 4.2e-07 58.2 81 45.7
Glyma.11G019800 Glycine max HOM05D001461 ORTHO05D002801 5.4e-07 57.8 48 64.6
Gorai.004G136500 Gossypium raimondii HOM05D001461 ORTHO05D002801 5.4e-07 57.8 47 66.0
VMungo0331G0912 Vigna mungo HOM05D001461 ORTHO05D002801 5.4e-07 57.8 74 50.0
Migut.B01817 Erythranthe guttata HOM05D001461 ORTHO05D002801 7.1e-07 57.4 81 50.6
TWI59G0643 Tripterygium wilfordii HOM05D001461 ORTHO05D002801 9.3e-07 57.0 80 46.2
ATR1093G017 Amborella trichopoda HOM05D001461 ORTHO05D002801 1.2e-06 56.6 50 64.0
Oeu063668.1 Olea europaea HOM05D001461 ORTHO05D002801 1.6e-06 56.2 75 45.3
Nitab4.5_0004613g0060 Nicotiana tabacum HOM05D001461 ORTHO05D002801 2.1e-06 55.8 57 54.4
Hund11423 Selenicereus undatus HOM05D001461 ORTHO05D002801 2.1e-06 55.8 57 54.4
SEGI_37763 Sequoiadendron giganteum HOM05D001461 ORTHO05D002801 2.1e-06 55.8 82 50.0
PSO063G5404 Papaver somniferum HOM05D001461 ORTHO05D002801 2.7e-06 55.5 82 47.6
PSO170G4506 Papaver somniferum HOM05D001461 ORTHO05D002801 2.7e-06 55.5 82 47.6
PSO384G2039 Papaver somniferum HOM05D001461 ORTHO05D002801 2.7e-06 55.5 83 47.0
CAN.G78.150 Capsicum annuum HOM05D001461 ORTHO05D002801 3.5e-06 55.1 87 39.1
PGR031G2389 Punica granatum HOM05D001461 ORTHO05D002801 3.5e-06 55.1 61 49.2
SalBow3G2208 Salvia bowleyana HOM05D001461 ORTHO05D002801 3.5e-06 55.1 82 47.6
Glyma.16G029900 Glycine max HOM05D001461 ORTHO05D002801 4.6e-06 54.7 87 43.7
Phvul.010G107800 Phaseolus vulgaris HOM05D001461 ORTHO05D002801 4.6e-06 54.7 74 50.0
PGSC0003DMG400000084 Solanum tuberosum HOM05D001461 ORTHO05D002801 4.6e-06 54.7 66 47.0
Peaxi162Scf01012g00235 Petunia axillaris HOM05D001461 ORTHO05D002801 7.8e-06 53.9 81 43.2
RcHm_v2.0_Chr1g0358461 Rosa chinensis HOM05D001461 ORTHO05D002801 7.8e-06 53.9 82 46.3
Solyc01g095390.3 Solanum lycopersicum HOM05D001461 ORTHO05D002801 7.8e-06 53.9 87 39.1


User provided reference genes

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