Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 2.2e-60 235.3 113 100.0
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 9.1e-46 186.8 114 83.3
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 9.1e-46 186.8 114 83.3
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 5.9e-45 184.1 114 84.2
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 5.9e-45 184.1 114 84.2
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 4.8e-39 164.5 115 72.2
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 5.5e-35 151.0 92 83.7
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.4e-32 141.7 120 62.5
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 7.5e-32 140.6 120 60.8
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-30 136.7 120 59.2
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-30 136.7 120 59.2
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 3.1e-30 135.2 120 58.3
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-30 135.2 120 58.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 3.1e-30 135.2 120 58.3
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 3.1e-30 135.2 120 58.3
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-29 133.3 120 58.3
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-28 129.4 120 56.7
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.7e-28 129.4 120 56.7
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 7.3e-27 124.0 121 57.9
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.0e-25 120.2 122 54.9
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.2e-24 116.7 119 48.7
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.7e-23 112.8 107 55.1
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 8.3e-23 110.5 100 61.0
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.2e-21 106.7 117 49.6
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-20 101.7 130 41.5
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 3.9e-20 101.7 130 41.5
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 5.0e-20 101.3 121 46.3
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-19 99.8 119 42.9
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-19 99.4 124 45.2
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 9.5e-19 97.1 98 53.1
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 9.5e-19 97.1 98 53.1
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 1.2e-18 96.7 116 45.7
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-18 96.3 124 44.4
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.6e-18 96.3 124 44.4
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 2.1e-18 95.9 119 42.0
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.1e-18 95.9 109 49.5
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-18 95.5 98 53.1
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 8.0e-18 94.0 115 44.3
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.8e-17 92.8 128 46.1
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.0e-17 91.7 132 40.2
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-16 89.7 98 49.0
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.8e-16 87.0 123 45.5
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.2e-15 85.9 119 41.2
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 2.9e-15 85.5 115 40.9
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 3.7e-15 85.1 124 43.5
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.4e-14 83.2 112 40.2
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-14 83.2 123 37.4
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.9e-14 82.8 115 40.0
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 5.4e-14 81.3 101 43.6
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 7.0e-14 80.9 131 41.2
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 9.2e-14 80.5 105 38.1
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 9.2e-14 80.5 109 36.7
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.7e-13 79.0 120 37.5
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 2.7e-13 79.0 113 39.8
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 3.5e-13 78.6 123 36.6
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 4.6e-13 78.2 123 36.6
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.6e-13 78.2 124 40.3
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.8e-13 77.4 118 39.8
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 1.0e-12 77.0 97 40.2
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-12 76.6 123 35.8
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-12 75.9 128 40.6
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 5.0e-12 74.7 123 35.0
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 8.6e-12 73.9 118 34.7
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 8.6e-12 73.9 127 36.2
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.9e-11 72.8 126 37.3
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 2.5e-11 72.4 143 36.4
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 2.5e-11 72.4 107 42.1
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 3.3e-11 72.0 124 37.9
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.3e-11 72.0 128 38.3
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 4.3e-11 71.6 130 40.8
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 5.6e-11 71.2 58 60.3
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 5.6e-11 71.2 112 39.3
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 9.5e-11 70.5 109 39.4
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-10 70.1 134 39.6
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.6e-10 69.7 90 43.3
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.8e-10 68.9 105 36.2
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 3.6e-10 68.6 110 34.5
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 4.7e-10 68.2 98 35.7
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 6.2e-10 67.8 100 38.0
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 6.2e-10 67.8 100 38.0
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 8.1e-10 67.4 98 36.7
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.1e-09 67.0 110 39.1
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.4e-09 66.6 108 35.2
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-09 66.6 113 35.4
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-09 66.2 123 35.8
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-09 65.9 123 34.1
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 2.3e-09 65.9 120 34.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.3e-09 65.9 108 35.2
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 2.3e-09 65.9 104 33.7
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 4.0e-09 65.1 110 34.5
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 4.0e-09 65.1 105 40.0
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 8.9e-09 63.9 109 36.7
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 8.9e-09 63.9 109 36.7
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 8.9e-09 63.9 109 36.7
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 8.9e-09 63.9 115 35.7
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 2.0e-08 62.8 110 32.7
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 2.6e-08 62.4 107 36.4
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 3.4e-08 62.0 118 33.9
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 4.4e-08 61.6 107 35.5
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 4.4e-08 61.6 110 31.8
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 5.8e-08 61.2 99 36.4
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.8e-08 61.2 107 33.6
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 5.8e-08 61.2 109 35.8
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 7.5e-08 60.8 111 35.1
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 7.5e-08 60.8 115 33.0
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 7.5e-08 60.8 115 32.2
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-07 60.1 115 33.9
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.7e-07 59.7 100 39.0
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.2e-07 59.3 105 36.2
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 2.9e-07 58.9 98 33.7
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 3.7e-07 58.5 125 30.4
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.9e-07 58.2 109 37.6
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 4.9e-07 58.2 50 54.0
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 4.9e-07 58.2 114 36.8
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 6.4e-07 57.8 69 43.5
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 6.4e-07 57.8 88 36.4
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 1.1e-06 57.0 115 30.4
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.9e-06 56.2 106 34.0
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.1e-06 55.1 106 34.0
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 9.2e-06 53.9 108 34.3
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 9.2e-06 53.9 95 32.6
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 9.2e-06 53.9 96 33.3


User provided reference genes

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