Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 2.7e-61 238.4 114 100.0
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.3e-39 166.4 115 72.2
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-39 164.5 115 71.3
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 4.9e-39 164.5 115 71.3
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 5.4e-38 161.0 120 63.3
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 3.5e-37 158.3 120 61.7
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 6.0e-37 157.5 115 69.6
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 6.0e-37 157.5 115 69.6
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 5.1e-36 154.5 120 60.8
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 5.1e-36 154.5 120 60.8
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-34 149.8 120 59.2
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 2.8e-34 148.7 120 60.0
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 8.1e-34 147.1 120 59.2
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 8.1e-34 147.1 120 59.2
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 8.1e-34 147.1 120 59.2
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-33 146.4 120 58.3
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-33 146.4 120 58.3
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 8.9e-33 143.7 121 61.2
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.4e-30 134.4 100 66.0
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.7e-28 129.4 122 54.1
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 2.3e-28 129.0 93 68.8
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-27 126.7 107 57.0
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.5e-27 125.6 117 52.1
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 2.4e-25 119.0 97 58.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.4e-25 119.0 119 47.9
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 5.2e-25 117.9 97 57.7
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-24 114.4 97 57.7
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.8e-24 114.4 112 54.5
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.9e-23 112.1 115 52.2
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 3.2e-22 108.6 97 53.6
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.9e-19 99.4 105 44.8
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.5e-19 99.0 115 43.5
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.3e-19 98.6 111 45.9
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.3e-19 98.2 123 48.0
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 1.1e-17 93.6 117 41.0
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 1.1e-17 93.6 124 46.8
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.1e-17 92.0 124 45.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 4.0e-17 91.7 130 37.7
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 4.0e-17 91.7 130 37.7
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.0e-17 91.7 109 40.4
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 6.9e-17 90.9 122 39.3
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 6.9e-17 90.9 124 39.5
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-16 90.1 123 39.0
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.5e-16 89.7 125 42.4
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.0e-16 89.4 125 43.2
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 3.4e-16 88.6 116 40.5
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 3.4e-16 88.6 130 40.0
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 4.5e-16 88.2 127 39.4
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 4.5e-16 88.2 123 39.8
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.5e-16 88.2 122 36.9
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-16 87.8 123 39.8
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-16 87.8 123 37.4
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-16 87.8 123 39.8
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-15 86.7 124 37.1
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-15 86.3 114 42.1
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 2.2e-15 85.9 124 37.1
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.2e-15 85.9 116 41.4
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 2.9e-15 85.5 113 40.7
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.9e-15 85.5 110 43.6
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 3.8e-15 85.1 110 43.6
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 3.8e-15 85.1 110 43.6
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 8.4e-15 84.0 123 36.6
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-14 83.6 123 38.2
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.9e-14 82.8 129 39.5
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.9e-14 82.8 108 43.5
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 7.1e-14 80.9 118 37.3
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 7.1e-14 80.9 92 45.7
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 9.3e-14 80.5 105 39.0
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.2e-13 80.1 129 36.4
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 1.2e-13 80.1 114 37.7
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.6e-13 79.7 98 39.8
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 3.5e-13 78.6 133 35.3
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 3.5e-13 78.6 147 33.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 3.5e-13 78.6 115 40.0
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 4.6e-13 78.2 147 32.0
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 6.0e-13 77.8 132 38.6
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 6.0e-13 77.8 103 42.7
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-12 77.0 98 45.9
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 2.3e-12 75.9 118 35.6
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 3.0e-12 75.5 112 37.5
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.1e-12 74.7 103 37.9
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 5.1e-12 74.7 109 36.7
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.7e-12 74.3 103 37.9
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 8.7e-12 73.9 107 37.4
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 8.7e-12 73.9 106 37.7
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-11 73.6 112 36.6
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-11 72.8 109 42.2
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.3e-11 72.0 121 37.2
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 3.3e-11 72.0 109 34.9
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 3.3e-11 72.0 108 33.3
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 4.3e-11 71.6 129 35.7
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 4.3e-11 71.6 119 39.5
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.6e-11 71.2 103 36.9
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 5.6e-11 71.2 109 35.8
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 5.6e-11 71.2 105 39.0
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 5.6e-11 71.2 115 37.4
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 7.4e-11 70.9 101 35.6
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 7.4e-11 70.9 112 37.5
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 1.3e-10 70.1 108 32.4
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-10 69.7 110 35.5
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-10 69.7 117 39.3
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-10 69.7 117 39.3
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 1.6e-10 69.7 106 32.1
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-10 69.3 123 35.0
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 2.1e-10 69.3 109 39.4
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 2.8e-10 68.9 121 34.7
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 3.6e-10 68.6 123 34.1
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.6e-10 68.6 109 36.7
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 4.8e-10 68.2 50 62.0
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 4.8e-10 68.2 106 38.7
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 4.8e-10 68.2 86 39.5
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 6.2e-10 67.8 106 38.7
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 6.2e-10 67.8 109 33.0
C06p24420 Brassica napus HOM05D017967 ORTHO05D003038 8.1e-10 67.4 121 35.5
BolC6t37589H Brassica oleracea HOM05D017967 ORTHO05D003038 8.1e-10 67.4 121 35.5
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-09 67.0 108 39.8
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.4e-09 66.6 114 41.2
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 1.4e-09 66.6 112 31.2
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.8e-09 66.2 111 35.1
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 3.1e-09 65.5 134 32.8
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.1e-09 65.5 128 34.4
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 3.1e-09 65.5 111 37.8
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 4.0e-09 65.1 122 34.4
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.3e-09 64.7 104 34.6
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.3e-09 64.7 115 31.3
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 6.9e-09 64.3 87 33.3
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 1.2e-08 63.5 122 35.2
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.2e-08 63.5 115 30.4
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-08 63.5 110 35.5
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 1.5e-08 63.2 124 33.9
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-08 63.2 110 33.6
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.5e-08 63.2 115 30.4
Carub.0002s1662 Capsella rubella HOM05D007482 ORTHO05D016827 2.6e-08 62.4 121 30.6
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 2.6e-08 62.4 104 37.5
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 3.4e-08 62.0 85 40.0
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 4.5e-08 61.6 116 34.5
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 7.6e-08 60.8 113 33.6
A07p23300 Brassica napus HOM05D017967 ORTHO05D003038 7.6e-08 60.8 122 33.6
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 7.6e-08 60.8 123 31.7
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 1.3e-07 60.1 123 34.1
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-07 59.7 106 35.8
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-07 59.7 106 35.8
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-07 59.7 106 35.8
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 2.2e-07 59.3 50 54.0
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 2.2e-07 59.3 97 39.2
CsaV3_7G033040 Cucumis sativus L. HOM05D005672 ORTHO05D003038 2.2e-07 59.3 86 34.9
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.9e-07 58.9 104 34.6
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 2.9e-07 58.9 70 47.1
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 2.9e-07 58.9 112 35.7
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 2.9e-07 58.9 118 33.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 3.8e-07 58.5 104 31.7
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 3.8e-07 58.5 105 36.2
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.9e-07 58.2 105 32.4
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.4e-07 57.8 58 44.8
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 8.4e-07 57.4 104 30.8
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 8.4e-07 57.4 103 30.1
ClCG09G002260 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.4e-06 56.6 92 32.6
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.9e-06 56.2 103 35.9
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 1.9e-06 56.2 114 32.5
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.2e-06 55.5 105 28.6
Migut.I00852 Erythranthe guttata HOM05D005672 ORTHO05D003038 3.2e-06 55.5 83 31.3
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 3.2e-06 55.5 109 33.9
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.2e-06 55.1 55 47.3
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 5.5e-06 54.7 108 31.5
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 5.5e-06 54.7 86 33.7
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.5e-06 54.7 109 33.9
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 5.5e-06 54.7 121 32.2


User provided reference genes

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