Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.0e-127 459.1 236 100.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-71 272.3 225 64.4
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.4e-69 266.9 228 68.4
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 9.4e-69 264.2 225 63.6
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.9e-67 258.8 233 62.2
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 7.4e-66 254.6 231 61.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.6e-60 235.7 226 61.5
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.2e-54 216.5 207 59.9
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 6.5e-54 214.9 205 60.0
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.2e-53 212.2 248 52.0
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 1.2e-52 210.7 228 59.6
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.1e-52 209.9 233 55.8
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 2.1e-52 209.9 228 59.6
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 3.6e-52 209.1 226 59.7
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-50 203.8 228 58.8
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 9.8e-50 201.1 245 51.8
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 4.2e-45 185.7 233 47.2
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.5e-34 150.6 230 46.5
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.5e-34 150.6 215 50.2
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.1e-24 117.9 230 40.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.1e-24 115.9 231 38.5
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.0e-24 115.2 221 40.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.0e-24 115.2 221 40.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 7.0e-24 115.2 221 40.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 9.2e-24 114.8 222 39.2
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.0e-23 113.6 229 40.2
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.7e-23 113.2 208 42.3
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.5e-23 112.8 225 41.3
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.5e-23 112.8 251 38.2
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.3e-22 110.9 216 39.8
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-22 110.5 208 41.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-22 110.5 208 41.8
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.7e-22 110.5 208 41.8
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.7e-22 110.5 223 40.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.3e-22 110.2 221 41.2
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-22 109.8 208 41.3
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-22 109.8 210 42.4
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.9e-22 109.4 219 39.7
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 3.9e-22 109.4 228 40.4
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.9e-22 109.4 224 38.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.9e-22 109.4 270 37.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.0e-22 109.0 230 43.0
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 8.6e-22 108.2 231 42.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-21 107.8 243 37.9
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.5e-21 107.5 226 38.9
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-21 107.5 208 41.8
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.5e-21 107.5 230 40.0
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.9e-21 107.1 234 41.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.9e-21 107.1 209 41.1
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-21 106.7 210 41.4
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.5e-21 106.7 233 41.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.5e-21 106.7 226 40.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 5.6e-21 105.5 234 41.0
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.3e-21 105.1 101 61.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 9.5e-21 104.8 259 36.7
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-20 104.4 221 40.7
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-20 104.0 280 35.0
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-20 104.0 280 35.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.1e-20 103.6 221 38.9
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.8e-20 103.2 212 41.5
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 3.6e-20 102.8 248 37.1
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.6e-20 102.8 113 55.8
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.7e-20 102.4 121 52.9
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.7e-20 102.4 105 57.1
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 4.7e-20 102.4 248 37.5
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 4.7e-20 102.4 238 37.0
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 6.2e-20 102.1 268 39.2
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.2e-20 102.1 106 58.5
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.1e-20 101.7 227 40.5
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.1e-20 101.7 211 40.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.4e-19 100.9 211 42.2
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.8e-19 100.5 287 34.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.8e-19 100.5 229 37.6
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.3e-19 100.1 234 37.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.3e-19 100.1 100 56.0
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.1e-19 99.8 206 39.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.8e-19 98.6 239 37.7
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 6.8e-19 98.6 256 37.5
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.9e-19 98.2 227 40.1
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 8.9e-19 98.2 235 37.0
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 8.9e-19 98.2 255 36.5
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.0e-18 97.1 221 43.4
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.0e-18 97.1 101 57.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.6e-18 96.7 227 37.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.4e-18 96.3 97 56.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 9.8e-18 94.7 264 36.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.3e-17 94.4 220 40.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.3e-17 94.4 116 51.7
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.7e-17 94.0 211 39.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.2e-17 93.6 203 37.9
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.7e-17 92.8 135 48.1
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 6.4e-17 92.0 261 37.2
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 6.4e-17 92.0 253 36.4
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 6.4e-17 92.0 217 35.5
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-16 91.3 100 57.0
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.4e-16 90.9 117 52.1
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.4e-16 90.1 217 37.8
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.4e-16 90.1 241 37.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 3.2e-16 89.7 225 37.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.1e-16 89.4 100 54.0
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 5.4e-16 89.0 232 35.8
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 7.1e-16 88.6 234 35.5
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 7.1e-16 88.6 244 34.4
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 7.1e-16 88.6 117 50.4
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 7.1e-16 88.6 230 37.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 9.2e-16 88.2 229 37.1
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.2e-15 87.8 250 34.8
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 4.6e-15 85.9 108 52.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 6.0e-15 85.5 98 53.1
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.8e-15 85.1 113 48.7
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.0e-14 84.7 77 64.9
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.3e-14 83.6 79 60.8
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 3.0e-14 83.2 102 48.0
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.9e-14 82.8 110 45.5
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.1e-14 82.4 178 41.0
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 5.1e-14 82.4 185 39.5
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 8.6e-14 81.6 109 47.7
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 8.6e-14 81.6 200 39.0
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.5e-13 80.9 102 51.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.5e-13 80.9 102 51.0
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 3.3e-13 79.7 99 48.5
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.3e-13 79.3 179 38.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 7.3e-13 78.6 101 51.5
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 7.3e-13 78.6 77 59.7
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.5e-13 78.2 115 45.2
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.6e-12 77.4 207 35.3
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.6e-12 76.3 211 35.5
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 6.2e-12 75.5 220 35.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.1e-11 74.7 60 66.7
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.4e-11 74.3 61 63.9
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.2e-10 71.2 237 33.8
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.6e-07 60.8 65 46.2
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.5e-07 59.7 62 46.8
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.5e-07 59.7 69 47.8
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.5e-07 59.7 69 47.8
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 3.5e-07 59.7 59 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.7e-06 57.4 57 52.6
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.0e-06 56.6 57 47.4


User provided reference genes

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