Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.4e-243 845.9 429 100.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.1e-240 836.3 429 98.8
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 7.6e-226 786.9 431 92.8
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.8e-220 768.5 431 92.1
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 8.1e-204 713.8 430 86.5
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.7e-199 698.7 431 84.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 4.6e-199 698.0 431 83.8
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 5.6e-197 691.0 359 98.3
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 1.6e-188 662.9 430 78.8
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 4.1e-187 658.3 430 79.5
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 9.4e-184 647.1 431 77.5
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 1.0e-182 643.7 431 77.5
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.4e-179 633.3 430 79.5
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.9e-169 599.0 430 73.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 9.1e-163 577.4 439 72.7
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 5.9e-162 574.7 422 74.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 4.4e-157 558.5 430 67.7
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.8e-126 456.8 345 74.5
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.2e-114 417.5 430 51.9
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.6e-114 417.2 433 51.7
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.6e-114 417.2 434 52.1
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 7.3e-112 408.3 431 51.5
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 4.7e-111 405.6 433 50.3
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 6.2e-111 405.2 432 50.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 6.8e-110 401.7 429 49.7
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 2.6e-109 399.8 429 50.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.6e-106 389.0 432 50.5
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 1.7e-105 387.1 434 49.5
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 4.3e-104 382.5 429 49.7
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 2.1e-103 380.2 431 48.3
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 4.8e-103 379.0 430 48.1
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.4e-102 377.5 434 47.5
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.6e-101 373.2 446 47.5
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 4.4e-101 372.5 429 46.6
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 7.6e-101 371.7 430 46.5
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 9.9e-101 371.3 432 46.5
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.7e-100 370.5 431 46.2
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.4e-99 367.5 430 46.7
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 5.4e-99 365.5 432 48.8
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 4.6e-98 362.5 426 46.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 4.6e-98 362.5 430 47.0
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.0e-98 362.1 432 46.1
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 7.8e-98 361.7 431 46.4
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 7.8e-98 361.7 427 45.7
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.0e-97 361.3 429 46.4
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 3.0e-97 359.8 432 48.4
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 8.7e-97 358.2 429 45.9
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.9e-96 357.1 431 45.5
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 4.3e-96 355.9 346 60.1
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.1e-95 353.6 431 45.5
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.1e-94 351.3 430 44.4
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.8e-94 350.5 429 45.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 2.4e-94 350.1 430 45.3
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.1e-94 349.7 429 46.6
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.3e-92 344.4 380 47.4
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.7e-92 344.0 432 47.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.7e-92 344.0 393 46.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.7e-92 344.0 431 44.3
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.8e-92 342.8 432 47.0
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 8.4e-92 341.7 432 45.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.4e-91 340.9 430 43.0
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.6e-90 337.4 378 48.4
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 4.6e-90 335.9 433 45.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.9e-88 330.5 432 45.4
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.9e-88 330.5 430 44.7
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-88 330.5 424 45.0
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.3e-88 329.7 424 44.6
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 4.3e-88 329.3 442 44.6
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.6e-88 328.9 428 45.6
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 7.4e-88 328.6 432 49.3
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.3e-87 327.8 399 46.4
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-87 327.8 433 44.3
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.6e-87 327.4 426 45.1
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-87 327.4 428 45.6
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-87 326.6 430 44.2
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 2.8e-87 326.6 430 45.1
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.7e-87 326.2 426 45.1
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 6.2e-87 325.5 433 44.1
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 8.1e-87 325.1 432 44.7
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.6e-85 320.1 430 43.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.6e-85 320.1 428 43.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.3e-84 317.8 430 43.5
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.9e-83 313.9 441 44.7
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.5e-83 313.5 434 43.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.5e-83 313.5 377 47.5
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 4.2e-83 312.8 432 42.6
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 4.2e-83 312.8 426 42.5
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.6e-82 310.8 395 43.3
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.7e-82 310.1 431 42.2
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 6.0e-82 308.9 434 43.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.1e-81 305.8 426 42.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 8.7e-81 305.1 442 43.7
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.1e-80 304.7 426 42.0
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 6.9e-78 295.4 368 43.8
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 5.8e-77 292.4 465 41.1
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-76 290.4 402 44.5
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 3.8e-76 289.7 468 41.2
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 5.5e-75 285.8 430 40.5
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 9.3e-75 285.0 471 36.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.1e-74 283.9 433 41.6
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.0e-73 281.6 402 40.5
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.3e-73 280.4 423 41.1
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.5e-72 276.9 391 39.6
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-72 276.9 423 42.6
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 2.5e-72 276.9 429 40.6
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.2e-71 273.9 434 40.6
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 3.6e-66 256.5 435 37.0
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 6.1e-66 255.8 335 44.8
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.1e-66 255.8 432 36.3
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.0e-65 255.0 432 36.6
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 6.7e-65 252.3 378 40.2
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.4e-62 243.8 411 37.2
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 6.5e-60 235.7 378 36.0
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.3e-55 221.5 363 35.5
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.9e-51 207.6 217 55.3
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.2e-50 204.9 395 33.7
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.2e-42 178.3 449 31.0
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 6.1e-42 176.0 395 32.7
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.5e-40 171.4 192 44.8
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.5e-40 171.4 261 41.8
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 2.0e-40 171.0 442 29.0
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.8e-38 164.5 153 58.2
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.7e-36 157.9 463 30.0
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.1e-35 155.2 211 42.2
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 4.2e-35 153.3 495 28.1
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 5.5e-35 152.9 437 30.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.0e-33 146.7 446 27.4
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 6.3e-31 139.4 406 28.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.1e-30 136.7 443 28.2
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 4.7e-26 123.2 209 41.1
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-23 113.2 471 27.0
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 4.9e-23 113.2 203 36.5
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 2.0e-21 107.8 144 38.9
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.1e-17 94.0 233 31.3
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 3.0e-12 77.4 76 46.1
C08p48240 Brassica napus HOM05D005393 ORTHO05D006257 5.6e-11 73.2 58 72.4
BolC8t49084H Brassica oleracea HOM05D000013 ORTHO05D000011 2.8e-10 70.9 41 82.9
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.1e-09 68.9 77 45.5
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 5.2e-09 66.6 62 45.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.5e-08 62.8 59 57.6
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 7.5e-08 62.8 61 47.5


User provided reference genes

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