Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1526.1 798 100.0
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1431.8 799 95.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1429.8 827 92.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1404.8 798 93.2
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1400.2 798 93.1
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1251.1 871 79.8
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 0.0e+00 1229.9 811 83.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1226.5 805 83.5
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1226.5 805 83.5
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1211.4 807 81.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1207.2 810 82.0
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1200.3 871 77.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1189.1 812 80.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1186.8 814 80.2
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1165.2 831 78.6
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1158.7 812 79.4
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 0.0e+00 1106.3 844 74.1
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.1e-293 1012.3 796 71.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.2e-282 974.2 802 70.2
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.8e-281 972.6 798 69.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.6e-280 968.8 806 68.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.8e-268 929.5 803 67.7
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.3e-243 845.5 792 63.0
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.7e-210 735.7 819 54.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 7.8e-208 728.0 798 54.6
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.1e-205 719.9 804 54.2
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 3.0e-204 716.1 797 53.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 8.9e-204 714.5 839 52.1
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 8.9e-204 714.5 813 53.8
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.3e-202 710.7 811 52.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 6.4e-202 708.4 827 52.0
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 3.6e-197 692.6 837 51.7
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.3e-196 689.9 795 52.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 4.0e-196 689.1 785 52.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 6.8e-196 688.3 811 50.9
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.4e-195 686.0 825 50.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.4e-195 686.0 817 51.4
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 9.8e-195 684.5 794 51.8
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.2e-194 683.3 803 52.6
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.1e-193 679.1 797 52.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 9.2e-193 677.9 819 51.5
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.2e-192 677.6 771 52.9
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.5e-192 676.0 863 50.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 4.6e-192 675.6 846 49.6
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.3e-191 673.3 810 51.5
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 3.0e-191 672.9 811 51.5
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 3.0e-191 672.9 810 51.0
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 6.6e-191 671.8 790 52.7
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.1e-189 666.8 827 51.1
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 8.1e-189 664.8 823 50.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.1e-188 664.5 808 50.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.4e-188 664.1 811 51.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.1e-188 662.9 796 50.4
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 6.8e-188 661.8 827 49.8
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.0e-187 660.2 813 50.1
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.6e-187 659.8 795 51.2
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-187 659.4 823 50.4
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.3e-186 654.8 825 48.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.1e-185 654.4 831 48.6
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.1e-185 652.5 784 50.0
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-184 650.6 803 49.6
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.6e-184 650.6 794 49.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-183 647.5 810 50.4
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 3.0e-183 646.4 791 49.9
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.9e-182 643.7 818 50.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.5e-182 643.3 803 48.9
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 7.3e-182 641.7 891 46.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.2e-181 641.0 819 48.6
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.8e-181 639.8 740 52.0
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 3.6e-181 639.4 817 49.0
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 4.7e-181 639.0 816 49.3
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.4e-180 636.7 894 46.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.0e-179 633.6 819 46.8
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.0e-179 633.6 799 49.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 5.8e-179 632.1 906 45.7
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.7e-178 630.6 818 48.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.9e-178 629.8 828 47.3
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 6.4e-178 628.6 841 48.6
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.1e-177 627.9 824 48.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 3.2e-177 626.3 912 46.6
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.2e-177 626.3 872 47.0
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 7.1e-177 625.2 797 48.1
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.2e-176 624.4 871 47.0
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.1e-176 623.6 901 45.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 4.6e-176 622.5 788 48.1
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.0e-176 622.1 870 46.8
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 6.0e-176 622.1 839 47.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.9e-175 619.4 812 47.9
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 6.6e-175 618.6 801 48.8
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 3.3e-174 616.3 800 48.5
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.3e-174 616.3 870 46.7
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.3e-174 616.3 799 48.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.1e-173 613.6 799 48.7
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.4e-171 605.9 856 46.5
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 5.8e-171 605.5 922 44.9
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.3e-170 604.4 813 47.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.3e-170 604.4 830 45.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 4.2e-169 599.4 794 47.0
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.4e-169 599.0 789 47.7
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.6e-168 597.4 822 47.3
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.1e-168 597.0 806 47.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.7e-168 596.7 830 46.0
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 3.5e-168 596.3 796 47.4
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 4.6e-168 595.9 870 46.6
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 3.9e-167 592.8 786 47.3
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.1e-167 592.4 777 48.4
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.5e-166 590.1 783 46.4
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 7.3e-166 588.6 990 41.8
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 2.4e-164 583.6 774 49.7
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.5e-163 580.9 795 46.9
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 5.8e-163 578.9 805 45.6
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 8.4e-162 575.1 811 44.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.4e-161 574.3 811 46.2
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 5.4e-161 572.4 828 45.4
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-160 570.9 828 45.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.7e-160 570.1 785 45.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.9e-158 563.9 882 42.5
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.2e-155 554.7 882 42.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.4e-153 547.7 838 43.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.9e-153 547.4 802 44.6
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.1e-150 538.1 677 49.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.0e-146 525.0 774 45.7
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.1e-142 511.5 813 42.1
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.4e-142 508.8 834 42.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.4e-140 504.6 794 42.6
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.8e-122 443.4 781 40.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-119 435.3 841 40.4
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.8e-119 434.5 764 39.5
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 5.2e-119 433.0 833 41.3
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.5e-110 404.8 815 37.3
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.5e-110 404.8 815 37.3
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.2e-107 395.2 887 34.9
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.0e-95 355.5 772 35.0
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 8.9e-95 352.4 668 39.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.5e-89 334.3 538 43.1
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 3.4e-86 323.9 244 66.0
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.4e-79 302.0 335 52.5
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-72 278.5 285 53.0
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 6.8e-63 246.5 956 26.8
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 8.9e-63 246.1 346 48.6
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.6e-56 224.2 251 53.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.8e-53 214.2 364 39.3
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.1e-52 212.6 114 100.0
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.1e-52 212.6 397 42.1
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-49 202.6 259 43.6
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.5e-46 190.7 378 40.5
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 3.9e-42 177.6 137 70.1
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 5.8e-38 163.7 496 30.4
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 7.6e-30 136.7 180 43.3
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 6.5e-29 133.7 98 69.4
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.2e-28 131.3 92 72.8
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.1e-27 128.6 178 48.3
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 6.7e-26 123.6 92 73.9
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 6.7e-26 123.6 156 43.6
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.1e-23 114.8 159 48.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 5.3e-23 114.0 111 55.0
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-22 112.5 86 67.4
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.0e-18 99.8 79 65.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 3.9e-18 97.8 89 59.6
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.3e-16 92.8 72 59.7
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.7e-16 92.4 89 57.3
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 6.3e-16 90.5 71 66.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 8.2e-16 90.1 83 60.2
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 4.1e-15 87.8 59 72.9
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 9.1e-15 86.7 118 42.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 4.5e-14 84.3 57 77.2
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 3.8e-13 81.3 108 45.4
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-12 79.3 59 64.4
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 3.2e-12 78.2 96 44.8
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.2e-12 77.8 63 71.4
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 3.0e-10 71.6 92 43.5
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.6e-09 68.6 126 39.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 4.4e-09 67.8 84 44.0
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.8e-08 64.3 60 51.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 8.2e-08 63.5 69 46.4
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.4e-07 62.8 60 56.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 9.1e-07 60.1 90 45.6
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 7.7e-06 57.0 42 57.1


User provided reference genes

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