Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 5.6e-192 674.1 338 100.0
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-190 669.8 338 99.1
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 2.4e-190 668.7 338 98.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 3.1e-190 668.3 338 98.8
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 4.0e-190 667.9 338 98.2
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 6.9e-190 667.2 338 98.8
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 9.0e-190 666.8 338 98.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.2e-189 666.4 335 99.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.5e-189 666.0 335 99.4
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.5e-189 666.0 335 99.4
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.0e-189 665.6 338 98.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 3.4e-189 664.8 335 99.1
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 7.6e-189 663.7 338 97.9
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.7e-188 662.5 338 97.9
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.9e-188 661.0 338 97.6
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 6.4e-188 660.6 335 98.8
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.4e-187 659.4 335 98.5
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.4e-187 658.7 338 97.9
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.2e-187 658.3 335 98.2
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 3.9e-185 651.4 351 94.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.5e-184 648.7 329 98.5
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.5e-179 632.1 338 93.5
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.2e-178 629.8 338 93.2
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 7.9e-178 627.1 316 99.4
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.3e-169 599.7 364 86.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.6e-167 592.8 338 86.4
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.8e-166 589.3 336 86.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.2e-165 586.6 336 84.8
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-165 586.3 336 85.4
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.5e-165 586.3 336 84.8
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.0e-165 585.9 333 85.0
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.5e-165 584.7 333 84.1
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 7.7e-165 583.9 339 85.3
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.3e-164 583.2 336 84.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.7e-164 582.8 339 84.1
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.2e-164 582.4 333 85.3
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.2e-164 582.4 338 84.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 2.9e-164 582.0 336 84.5
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 2.9e-164 582.0 336 84.2
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.8e-164 581.6 333 84.1
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 3.8e-164 581.6 334 85.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.0e-164 581.3 333 83.2
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 6.5e-164 580.9 338 83.4
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 8.5e-164 580.5 334 84.4
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 8.5e-164 580.5 336 84.2
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.1e-163 580.1 334 84.7
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.4e-163 579.7 333 84.1
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.4e-163 579.7 333 84.4
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.9e-163 579.3 333 84.4
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.9e-163 579.3 333 84.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.9e-163 579.3 334 84.7
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.2e-163 578.6 333 85.0
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 3.2e-163 578.6 338 84.6
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 4.2e-163 578.2 335 84.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 4.2e-163 578.2 333 84.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 5.5e-163 577.8 334 84.4
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 5.5e-163 577.8 335 84.2
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 7.2e-163 577.4 335 83.6
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 9.4e-163 577.0 334 83.8
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 9.4e-163 577.0 336 83.0
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.2e-162 576.6 336 83.3
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.1e-162 575.9 337 82.8
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 2.1e-162 575.9 338 83.1
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 2.7e-162 575.5 336 83.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 3.6e-162 575.1 338 84.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.6e-162 575.1 338 84.0
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.6e-162 575.1 338 84.0
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 3.6e-162 575.1 336 82.7
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.6e-162 575.1 333 84.1
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.6e-162 575.1 336 83.6
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 4.6e-162 574.7 333 84.7
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 4.6e-162 574.7 336 83.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.6e-162 574.7 337 83.7
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.0
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.0
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.0
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.4e-161 573.2 336 82.4
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.8e-161 572.8 339 83.8
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 83.3
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 83.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 82.7
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 82.7
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 334 82.9
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 5.1e-161 571.2 336 82.7
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 6.7e-161 570.9 336 83.0
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 6.7e-161 570.9 336 82.4
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 6.7e-161 570.9 336 82.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 8.8e-161 570.5 334 82.6
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.8e-161 570.5 338 83.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 8.8e-161 570.5 336 83.0
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.1e-160 570.1 334 82.6
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-160 570.1 339 83.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 82.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.0e-160 569.3 335 82.7
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 3.3e-160 568.5 333 83.8
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 5.7e-160 567.8 334 82.9
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 9.7e-160 567.0 337 82.5
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.3e-159 566.6 335 83.6
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.3e-159 566.6 336 82.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 2.8e-159 565.5 335 83.3
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.7e-159 565.1 336 81.2
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.3e-159 564.3 336 82.4
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 4.5e-157 558.1 355 78.9
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.9e-156 555.4 333 80.5
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 8.5e-156 553.9 319 84.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.2e-155 552.0 335 80.9
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 7.2e-155 550.8 318 84.9
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.8e-153 546.2 317 83.9
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 3.9e-153 545.0 333 80.5
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 8.8e-153 543.9 309 84.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.1e-152 543.5 378 72.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.6e-152 542.3 309 84.5
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.7e-152 540.4 319 83.7
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.7e-151 539.7 334 79.0
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.8e-151 538.1 333 78.4
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.4e-150 536.6 336 79.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.4e-150 536.6 317 82.3
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 2.0e-149 532.7 316 82.6
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.7e-149 530.8 333 78.7
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 5.5e-147 524.6 337 75.4
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.2e-146 523.5 339 74.3
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 6.1e-146 521.2 336 78.0
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 4.0e-145 518.5 338 74.6
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.5e-144 514.2 335 74.6
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.7e-143 513.1 335 74.6
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.8e-142 509.6 381 69.6
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.6e-138 496.5 421 63.4
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 5.9e-133 478.0 292 80.5
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.0e-132 477.2 271 85.6
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.7e-132 476.5 316 72.5
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 9.8e-128 460.7 335 71.3
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 6.3e-127 458.0 265 84.5
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-126 457.2 265 84.9
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-126 457.2 265 84.9
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 2.1e-122 443.0 336 69.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.9e-121 437.6 344 64.8
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.2e-120 437.2 337 68.0
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 7.3e-115 417.9 238 85.3
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 6.2e-114 414.8 329 60.8
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.5e-112 410.2 251 78.9
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 6.0e-109 398.3 251 78.1
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 9.8e-104 380.9 329 60.2
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.4e-103 378.3 246 75.6
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 4.3e-99 365.5 216 81.0
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 5.6e-99 365.2 326 54.9
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 6.7e-52 208.8 132 77.3
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.1e-41 171.8 164 59.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.7e-34 151.0 179 53.1
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.3e-27 126.7 79 74.7
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.7e-26 124.4 74 81.1
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 72 79.2
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.1e-25 120.2 79 72.2
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 4.8e-18 96.3 77 61.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.9e-15 87.0 51 82.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 6.1e-13 79.3 99 47.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.7e-11 72.8 57 66.7
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.3e-10 71.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.4e-09 68.2 100 43.0
Os06g0703600 Oryza sativa ssp. japonica HOM05D002797 ORTHO05D003496 1.6e-08 64.7 171 26.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.7e-07 61.2 60 55.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.7e-07 61.2 60 55.0


User provided reference genes

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