Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24910 Brassica carinata HOM05D003282 ORTHO05D003637 1.6e-36 155.6 82 100.0
Sp1g08830 Schrenkiella parvula HOM05D003282 ORTHO05D003637 1.8e-22 109.0 83 79.5
BolC5t29586H Brassica oleracea HOM05D003282 ORTHO05D003637 3.9e-22 107.8 83 77.1
BraA06t23902Z Brassica rapa HOM05D003282 ORTHO05D003637 1.3e-20 102.8 83 75.9
Carub.0001s0962 Capsella rubella HOM05D003282 ORTHO05D003637 3.4e-18 94.7 84 69.0
BcaC07g38543 Brassica carinata HOM05D003282 ORTHO05D003637 5.8e-18 94.0 84 66.7
C08p13520 Brassica napus HOM05D003282 ORTHO05D003637 5.8e-18 94.0 84 66.7
BolC8t48987H Brassica oleracea HOM05D003282 ORTHO05D003637 5.8e-18 94.0 84 66.7
A08p34100 Brassica napus HOM05D003282 ORTHO05D003637 1.4e-16 89.4 87 62.1
Thhalv10008760m.g Eutrema salsugineum HOM05D003282 ORTHO05D003637 1.9e-16 89.0 78 65.4
CARHR010340 Cardamine hirsuta HOM05D003282 ORTHO05D003637 1.0e-14 83.2 47 91.5
AT1G10220 Arabidopsis thaliana HOM05D003282 ORTHO05D003637 1.3e-14 82.8 49 83.7
C05p08360 Brassica napus HOM05D002240 ORTHO05D002453 3.0e-14 81.6 50 90.0
A06p06880 Brassica napus HOM05D002240 ORTHO05D002453 6.7e-14 80.5 50 90.0
BraA08t35322Z Brassica rapa HOM05D003282 ORTHO05D003637 1.2e-10 69.7 61 65.6
BcaB08g37338 Brassica carinata HOM05D002240 ORTHO05D002453 2.2e-09 65.5 79 54.4
A09p65150 Brassica napus HOM05D002240 ORTHO05D002453 2.2e-09 65.5 75 53.3
BraA09t41858Z Brassica rapa HOM05D002240 ORTHO05D002453 2.2e-09 65.5 75 53.3
CARHR283800 Cardamine hirsuta HOM05D003282 ORTHO05D003637 5.0e-09 64.3 64 59.4
BcaC06g31788 Brassica carinata HOM05D003282 ORTHO05D003637 6.5e-09 63.9 65 58.5
Thhalv10024035m.g Eutrema salsugineum HOM05D003282 ORTHO05D003637 6.5e-09 63.9 71 59.2
THA.LOC104816757 Tarenaya hassleriana HOM05D003282 ORTHO05D003637 8.4e-09 63.5 79 53.2
BcaC02g10643 Brassica carinata HOM05D003282 ORTHO05D003637 1.1e-08 63.2 57 63.2
A01p28690 Brassica napus HOM05D003282 ORTHO05D003637 1.1e-08 63.2 65 58.5
C01p36330 Brassica napus HOM05D003282 ORTHO05D003637 1.1e-08 63.2 65 58.5
C04p26130 Brassica napus HOM05D003282 ORTHO05D003637 1.1e-08 63.2 57 63.2
BolC1t03591H Brassica oleracea HOM05D003282 ORTHO05D003637 1.1e-08 63.2 65 58.5
BraA01t03034Z Brassica rapa HOM05D003282 ORTHO05D003637 4.2e-08 61.2 65 56.9
AL2G17480 Arabidopsis lyrata HOM05D003282 ORTHO05D003637 7.1e-08 60.5 71 57.7
Aa31LG2G10560 Aethionema arabicum HOM05D003282 ORTHO05D003637 1.2e-07 59.7 68 54.4
BcaC07g41826 Brassica carinata HOM05D002240 ORTHO05D002453 1.2e-07 59.7 50 68.0
C08p49090 Brassica napus HOM05D002240 ORTHO05D002453 1.2e-07 59.7 50 68.0
BolC8t52441H Brassica oleracea HOM05D002240 ORTHO05D002453 1.2e-07 59.7 50 68.0
Carub.0002s0586 Capsella rubella HOM05D003282 ORTHO05D003637 2.7e-07 58.5 45 68.9
BolC4t24191H Brassica oleracea HOM05D003282 ORTHO05D003637 4.6e-07 57.8 43 69.8
AT1G59590 Arabidopsis thaliana HOM05D003282 ORTHO05D003637 6.1e-07 57.4 71 56.3
BcaC04g22171 Brassica carinata HOM05D003282 ORTHO05D003637 8.7e-06 53.5 66 53.0
C09p22500 Brassica napus HOM05D003282 ORTHO05D003637 8.7e-06 53.5 66 53.0
BolC9t55167H Brassica oleracea HOM05D003282 ORTHO05D003637 8.7e-06 53.5 66 53.0


User provided reference genes

Program Settings