Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24893 Brassica carinata HOM05D003287 ORTHO05D003688 1.1e-59 233.0 109 100.0
BcaC05g24896 Brassica carinata HOM05D003287 ORTHO05D003688 1.2e-39 166.4 74 98.6
BcaC05g24921 Brassica carinata HOM05D003287 ORTHO05D003688 1.2e-39 166.4 74 98.6
A06p07040 Brassica napus HOM05D003287 ORTHO05D003688 1.2e-39 166.4 74 98.6
C05p08530 Brassica napus HOM05D003287 ORTHO05D003688 1.2e-39 166.4 74 98.6
BraA06t23918Z Brassica rapa HOM05D003287 ORTHO05D003688 1.2e-39 166.4 74 98.6
BcaC05g24890 Brassica carinata HOM05D003287 ORTHO05D003688 8.0e-39 163.7 74 95.9
BolC5t29603H Brassica oleracea HOM05D003287 ORTHO05D003688 8.0e-39 163.7 74 95.9
CARHR010510 Cardamine hirsuta HOM05D003287 ORTHO05D003688 1.0e-38 163.3 74 95.9
Carub.0001s0980 Capsella rubella HOM05D003287 ORTHO05D003688 8.8e-38 160.2 74 93.2
Thhalv10008265m.g Eutrema salsugineum HOM05D003287 ORTHO05D003688 1.2e-37 159.8 74 93.2
AL1G21120 Arabidopsis lyrata HOM05D003287 ORTHO05D003688 2.6e-37 158.7 74 91.9
Sp1g08980 Schrenkiella parvula HOM05D003287 ORTHO05D003688 5.7e-37 157.5 74 91.9
AT1G10380 Arabidopsis thaliana HOM05D003287 ORTHO05D003688 3.7e-36 154.8 74 89.2
Aa31LG1G4540 Aethionema arabicum HOM05D003287 ORTHO05D003688 2.9e-33 145.2 74 79.7
THA.LOC104816728 Tarenaya hassleriana HOM05D003287 ORTHO05D003688 4.7e-31 137.9 74 81.1
Sabra10G0026600 Salix brachista HOM05D003287 ORTHO05D003688 2.9e-25 118.6 74 68.9
TWI18G0836 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 3.8e-25 118.2 74 67.6
Potri.010G040500 Populus trichocarpa HOM05D003287 ORTHO05D003688 5.0e-25 117.9 74 67.6
Atru.chr11.1884 Acer truncatum HOM05D003287 ORTHO05D003688 1.1e-24 116.7 74 67.6
TWI75G1209 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 1.1e-24 116.7 74 67.6
Manes.01G192800 Manihot esculenta HOM05D003287 ORTHO05D003688 1.5e-24 116.3 74 66.2
Phvul.002G080000 Phaseolus vulgaris HOM05D003287 ORTHO05D003688 1.6e-23 112.8 74 64.9
VMungo1215G2363 Vigna mungo HOM05D003287 ORTHO05D003688 1.6e-23 112.8 74 64.9
FvH4_4g35530 Fragaria vesca HOM05D003287 ORTHO05D003688 4.7e-23 111.3 74 66.2
FAN22G2046 Fragaria x ananassa HOM05D003287 ORTHO05D003688 4.7e-23 111.3 74 66.2
PGR119G1934 Punica granatum HOM05D003287 ORTHO05D003688 6.1e-23 110.9 74 63.5
Lalb_Chr05g0217491 Lupinus albus HOM05D003287 ORTHO05D003688 8.0e-23 110.5 74 64.9
arahy.Tifrunner.gnm1.ann1.7VFA6D Arachis hypogaea HOM05D003287 ORTHO05D003688 1.0e-22 110.2 74 64.9
arahy.Tifrunner.gnm1.ann1.IV17LC Arachis hypogaea HOM05D003287 ORTHO05D003688 1.0e-22 110.2 74 64.9
FAN07G0260 Fragaria x ananassa HOM05D003287 ORTHO05D003688 1.0e-22 110.2 74 64.9
Duzib248G0322 Durio zibethinus HOM05D003287 ORTHO05D003688 1.4e-22 109.8 99 51.5
Ciclev10032232m.g Citrus clementina HOM05D003287 ORTHO05D003688 1.8e-22 109.4 111 49.5
QL03p066527 Quercus lobata HOM05D003287 ORTHO05D003688 1.8e-22 109.4 74 63.5
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 2.3e-22 109.0 75 62.7
Duzib251G0030 Durio zibethinus HOM05D003287 ORTHO05D003688 2.3e-22 109.0 74 60.8
Glyma.01G039900 Glycine max HOM05D003287 ORTHO05D003688 2.3e-22 109.0 74 63.5
Glyma.02G024900 Glycine max HOM05D003287 ORTHO05D003688 2.3e-22 109.0 74 63.5
MD16G1081500 Malus domestica HOM05D003287 ORTHO05D003688 2.3e-22 109.0 74 63.5
RcHm_v2.0_Chr4g0445181 Rosa chinensis HOM05D003287 ORTHO05D003688 2.3e-22 109.0 74 64.9
GSVIVG01020110001 Vitis vinifera HOM05D003287 ORTHO05D003688 3.0e-22 108.6 74 58.1
Haze_12088 Corylus avellana HOM05D003287 ORTHO05D003688 4.0e-22 108.2 74 62.2
FAN17G0444 Fragaria x ananassa HOM05D003287 ORTHO05D003688 4.0e-22 108.2 74 63.5
Lj2g0013263 Lotus japonicus HOM05D003287 ORTHO05D003688 4.0e-22 108.2 74 63.5
CiPaw.05G142400 Carya illinoinensis HOM05D003287 ORTHO05D003688 6.8e-22 107.5 74 62.2
Medtr5g037310 Medicago truncatula HOM05D003287 ORTHO05D003688 6.8e-22 107.5 74 63.5
Gohir.A03G145300 Gossypium hirsutum HOM05D003287 ORTHO05D003688 8.9e-22 107.1 73 60.3
Gohir.D02G168700 Gossypium hirsutum HOM05D003287 ORTHO05D003688 8.9e-22 107.1 73 60.3
Gorai.005G189100 Gossypium raimondii HOM05D003287 ORTHO05D003688 8.9e-22 107.1 73 60.3
Psat2g114880 Pisum sativum HOM05D003287 ORTHO05D003688 8.9e-22 107.1 74 63.5
Ca_04687_v3 Cicer arietinum L. HOM05D003287 ORTHO05D003688 1.2e-21 106.7 74 63.5
MD13G1082400 Malus domestica HOM05D003287 ORTHO05D003688 1.2e-21 106.7 74 63.5
Cfa009055 Carpinus fangiana HOM05D003287 ORTHO05D003688 1.5e-21 106.3 74 60.8
Rhsim12G0128300 Rhododendron simsii HOM05D003287 ORTHO05D003688 1.5e-21 106.3 74 62.2
Cc11_g13740 Coffea canephora HOM05D003287 ORTHO05D003688 2.6e-21 105.5 74 58.1
Eucgr.B03398 Eucalyptus grandis HOM05D003287 ORTHO05D003688 2.6e-21 105.5 84 56.0
CSS0029206 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 5.7e-21 104.4 74 60.8
CSS0035567 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 7.5e-21 104.0 74 60.8
CSS0039777 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 1.7e-20 102.8 74 59.5
CAN.G27.49 Capsicum annuum HOM05D003287 ORTHO05D003688 1.7e-20 102.8 74 59.5
Sed0016162 Sechium edule HOM05D003287 ORTHO05D003688 1.7e-20 102.8 74 58.1
TPR.G26727 Trifolium pratense HOM05D003287 ORTHO05D003688 1.7e-20 102.8 74 59.5
Aqoxy3G03209 Aquilegia oxysepala HOM05D003287 ORTHO05D003688 4.9e-20 101.3 71 57.7
Prupe.3G121800 Prunus persica HOM05D003287 ORTHO05D003688 4.9e-20 101.3 76 63.2
Solyc05g006700.4 Solanum lycopersicum HOM05D003287 ORTHO05D003688 4.9e-20 101.3 74 59.5
Sopen05g002650 Solanum pennellii HOM05D003287 ORTHO05D003688 4.9e-20 101.3 74 59.5
PGSC0003DMG400022598 Solanum tuberosum HOM05D003287 ORTHO05D003688 4.9e-20 101.3 74 59.5
Lj6P796T40 Lonicera japonica HOM05D003287 ORTHO05D003688 6.3e-20 100.9 74 56.8
CANSAT01G0301 Cannabis sativa HOM05D003287 ORTHO05D003688 8.3e-20 100.5 74 55.4
Ah.02g131880 Amaranthus hybridus HOM05D003287 ORTHO05D003688 1.8e-19 99.4 74 55.4
ClCG08G009030 Citrullus lanatus HOM05D003287 ORTHO05D003688 1.8e-19 99.4 74 56.8
PSO210G2606 Papaver somniferum HOM05D003287 ORTHO05D003688 1.8e-19 99.4 75 57.3
Peaxi162Scf00026g00214 Petunia axillaris HOM05D003287 ORTHO05D003688 1.8e-19 99.4 74 55.4
TAR374G1554 Trochodendron aralioides HOM05D003287 ORTHO05D003688 1.8e-19 99.4 74 56.8
EL10Ac6g13121 Beta vulgaris HOM05D003287 ORTHO05D003688 2.4e-19 99.0 75 54.7
CsaV3_6G036120 Cucumis sativus L. HOM05D003287 ORTHO05D003688 2.4e-19 99.0 74 55.4
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 2.4e-19 99.0 74 50.0
Peaxi162Scf00209g00931 Petunia axillaris HOM05D003287 ORTHO05D003688 3.1e-19 98.6 74 56.8
Nn4g22993 Nelumbo nucifera HOM05D003287 ORTHO05D003688 4.1e-19 98.2 74 54.1
Nitab4.5_0002594g0060 Nicotiana tabacum HOM05D003287 ORTHO05D003688 4.1e-19 98.2 74 52.7
AUR62026295 Chenopodium quinoa HOM05D003287 ORTHO05D003688 5.4e-19 97.8 74 55.4
MELO3C000449.2 Cucumis melo HOM05D003287 ORTHO05D003688 5.4e-19 97.8 74 54.1
ECA246G2920 Erigeron canadensis HOM05D003287 ORTHO05D003688 5.4e-19 97.8 74 55.4
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 5.4e-19 97.8 74 52.7
Hund25287 Selenicereus undatus HOM05D003287 ORTHO05D003688 9.2e-19 97.1 74 56.8
Nitab4.5_0000408g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 1.2e-18 96.7 74 55.4
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 1.6e-18 96.3 74 55.4
Lsat_1_v5_gn_3_50580 Lactuca sativa HOM05D003287 ORTHO05D003688 1.6e-18 96.3 74 56.8
PSO761G0447 Papaver somniferum HOM05D003287 ORTHO05D003688 1.6e-18 96.3 75 54.7
AUR62026487 Chenopodium quinoa HOM05D003287 ORTHO05D003688 2.0e-18 95.9 74 54.1
SalBow2G0631 Salvia bowleyana HOM05D003287 ORTHO05D003688 1.0e-17 93.6 83 50.6
ATR0001G059 Amborella trichopoda HOM05D003287 ORTHO05D003688 2.9e-17 92.0 75 54.7
PSO591G0121 Papaver somniferum HOM05D003287 ORTHO05D003688 2.5e-16 89.0 74 47.3
PSO832G2557 Papaver somniferum HOM05D003287 ORTHO05D003688 2.5e-16 89.0 74 47.3
MSTRG.657 Avicennia marina HOM05D003287 ORTHO05D003688 2.1e-15 85.9 75 52.0
SGA_v2.0_scaffold166G38304 Striga asiatica HOM05D003287 ORTHO05D003688 4.7e-15 84.7 75 50.7
Hma1.2p1_0265F.1_g106450 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 8.0e-15 84.0 59 61.0
SEGI_08810 Sequoiadendron giganteum HOM05D003287 ORTHO05D003688 9.8e-13 77.0 77 44.2
SEGI_28894 Sequoiadendron giganteum HOM05D003287 ORTHO05D003688 9.8e-13 77.0 77 44.2
Hma1.2p1_0289F.1_g114310 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 7.0e-11 70.9 48 62.5
SEGI_13335 Sequoiadendron giganteum HOM05D003287 ORTHO05D003688 9.2e-11 70.5 75 40.0
MBI04_g26972_MAGBIO Magnolia biondii HOM05D003287 ORTHO05D003688 2.0e-10 69.3 76 42.1
ATR0177G004 Amborella trichopoda HOM05D003287 ORTHO05D003688 4.6e-10 68.2 75 44.0
COL.COLO4_27270 Corchorus olitorius HOM05D003287 ORTHO05D003688 6.0e-10 67.8 76 40.8
MSTRG.2304 Avicennia marina HOM05D003287 ORTHO05D003688 1.0e-09 67.0 74 43.2
Hma1.2p1_0190F.1_g082970 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 1.0e-09 67.0 76 39.5
MBI19_g30539_MAGBIO Magnolia biondii HOM05D003287 ORTHO05D003688 1.3e-09 66.6 74 44.6
QL06p048933 Quercus lobata HOM05D003287 ORTHO05D003688 3.0e-09 65.5 76 39.5
PSO541G4688 Papaver somniferum HOM05D003287 ORTHO05D003688 5.0e-09 64.7 75 38.7
ClCG01G013240 Citrullus lanatus HOM05D007075 ORTHO05D009063 6.6e-09 64.3 92 31.5
TAR076G0004 Trochodendron aralioides HOM05D003287 ORTHO05D003688 8.6e-09 63.9 76 39.5
vmacro10425 Vaccinium macrocarpon HOM05D003287 ORTHO05D003688 8.6e-09 63.9 74 41.9
Medtr8g090055 Medicago truncatula HOM05D003287 ORTHO05D003688 1.1e-08 63.5 75 41.3
Peaxi162Scf00255g01020 Petunia axillaris HOM05D007075 ORTHO05D009063 1.1e-08 63.5 71 39.4
ATR0661G380 Amborella trichopoda HOM05D003287 ORTHO05D003688 1.5e-08 63.2 77 40.3
Dinv16734 Davidia involucrata HOM05D003287 ORTHO05D003688 1.5e-08 63.2 74 40.5
Nitab4.5_0000025g0540 Nicotiana tabacum HOM05D007075 ORTHO05D009063 1.5e-08 63.2 94 33.0
PSO781G0085 Papaver somniferum HOM05D003287 ORTHO05D003688 1.5e-08 63.2 79 36.7
SalBow8G3723 Salvia bowleyana HOM05D003287 ORTHO05D003688 1.5e-08 63.2 74 41.9
COL.COLO4_27884 Corchorus olitorius HOM05D003287 ORTHO05D003688 1.9e-08 62.8 74 40.5
Rhsim09G0127300 Rhododendron simsii HOM05D003287 ORTHO05D003688 1.9e-08 62.8 74 40.5
ECA246G3970 Erigeron canadensis HOM05D000779 ORTHO05D009063 2.5e-08 62.4 71 36.6
Dinv34070 Davidia involucrata HOM05D000677 ORTHO05D000727 3.3e-08 62.0 74 40.5
Lsat_1_v5_gn_5_15080 Lactuca sativa HOM05D007075 ORTHO05D009063 3.3e-08 62.0 71 36.6
Rhsim08G0173900 Rhododendron simsii HOM05D007075 ORTHO05D009063 3.3e-08 62.0 71 39.4
unitig_0.g795 Utricularia gibba HOM05D007075 ORTHO05D009063 3.3e-08 62.0 71 36.6
CANSAT80G1271 Cannabis sativa HOM05D007075 ORTHO05D009063 4.3e-08 61.6 71 38.0
CDE11G0724 Ceratophyllum demersum HOM05D003287 ORTHO05D003688 4.3e-08 61.6 76 35.5
MELO3C002274.2 Cucumis melo HOM05D007075 ORTHO05D009063 4.3e-08 61.6 71 35.2
CsaV3_1G008600 Cucumis sativus L. HOM05D007075 ORTHO05D009063 4.3e-08 61.6 71 35.2
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 4.3e-08 61.6 74 40.5
Thecc.02G330400 Theobroma cacao HOM05D003287 ORTHO05D003688 4.3e-08 61.6 74 40.5
Dinv34069 Davidia involucrata HOM05D000677 ORTHO05D000727 5.6e-08 61.2 74 40.5
Eucgr.B03150 Eucalyptus grandis HOM05D005706 ORTHO05D007474 5.6e-08 61.2 74 39.2
Hma1.2p1_0566F.1_g179780 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 5.6e-08 61.2 74 39.2
Aa31LG8G4270 Aethionema arabicum HOM05D002950 ORTHO05D009601 7.3e-08 60.8 72 40.3
arahy.Tifrunner.gnm1.ann1.W0ETWJ Arachis hypogaea HOM05D003287 ORTHO05D003688 7.3e-08 60.8 74 40.5
Sed0017346 Sechium edule HOM05D007075 ORTHO05D009063 7.3e-08 60.8 71 35.2
Atru.chr11.1634 Acer truncatum HOM05D003287 ORTHO05D003688 9.5e-08 60.5 75 41.3
arahy.Tifrunner.gnm1.ann1.9XQY3T Arachis hypogaea HOM05D003287 ORTHO05D003688 9.5e-08 60.5 74 40.5
arahy.Tifrunner.gnm1.ann1.SMG0EF Arachis hypogaea HOM05D003287 ORTHO05D003688 9.5e-08 60.5 74 40.5
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 9.5e-08 60.5 76 34.2
Duzib251G0290 Durio zibethinus HOM05D003287 ORTHO05D003688 9.5e-08 60.5 74 40.5
Gohir.A13G082600 Gossypium hirsutum HOM05D005706 ORTHO05D007474 1.2e-07 60.1 74 39.2
Nn5g30082 Nelumbo nucifera HOM05D003287 ORTHO05D003688 1.6e-07 59.7 77 37.7
PGR102G1693 Punica granatum HOM05D003287 ORTHO05D003688 1.6e-07 59.7 74 39.2
CSS0002708 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 2.1e-07 59.3 76 35.5
Eucgr.I00510 Eucalyptus grandis HOM05D003287 ORTHO05D003688 2.1e-07 59.3 76 38.2
Nitab4.5_0001514g0030 Nicotiana tabacum HOM05D007075 ORTHO05D009063 2.1e-07 59.3 72 37.5
Nitab4.5_0001726g0050 Nicotiana tabacum HOM05D003287 ORTHO05D003688 2.1e-07 59.3 45 55.6
MSTRG.4369 Avicennia marina HOM05D007075 ORTHO05D009063 2.8e-07 58.9 71 35.2
MD13G1062800 Malus domestica HOM05D003287 ORTHO05D003688 2.8e-07 58.9 75 41.3
A05p32410 Brassica napus HOM05D002950 ORTHO05D009601 1.1e-06 57.0 76 34.2
BraA05t22068Z Brassica rapa HOM05D002950 ORTHO05D009601 1.1e-06 57.0 76 34.2
CARHR092670 Cardamine hirsuta HOM05D002950 ORTHO05D009601 1.4e-06 56.6 76 32.9
Gohir.A09G241900 Gossypium hirsutum HOM05D002950 ORTHO05D009601 1.4e-06 56.6 71 38.0
Gohir.D09G242600 Gossypium hirsutum HOM05D002950 ORTHO05D009601 1.4e-06 56.6 71 38.0
Gorai.006G266300 Gossypium raimondii HOM05D002950 ORTHO05D009601 1.4e-06 56.6 71 38.0
MBI18_g28903_MAGBIO Magnolia biondii HOM05D002950 ORTHO05D009601 2.3e-06 55.8 75 37.3
HanXRQChr11g0350781 Helianthus annuus HOM05D002950 ORTHO05D009601 5.2e-06 54.7 71 31.0
Carub.0003s1706 Capsella rubella HOM05D002950 ORTHO05D009601 6.8e-06 54.3 73 34.2
THA.LOC104821807 Tarenaya hassleriana HOM05D002950 ORTHO05D009601 6.8e-06 54.3 72 36.1
Sp3g15520 Schrenkiella parvula HOM05D002950 ORTHO05D009601 8.9e-06 53.9 73 35.6


User provided reference genes

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