Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 2.3e-230 802.0 429 100.0
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 2.3e-222 775.4 470 91.1
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 3.0e-222 775.0 445 94.6
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 1.2e-199 699.9 444 87.4
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 1.5e-170 603.2 454 76.9
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 1.2e-159 567.0 429 73.7
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 8.8e-158 560.8 434 74.4
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 1.2e-141 507.3 420 71.2
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 9.8e-141 504.2 429 67.4
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 6.6e-137 491.5 407 69.5
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 1.0e-113 414.5 331 71.9
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 4.3e-104 382.5 330 67.9
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 9.0e-78 295.0 389 50.4
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 5.8e-77 292.4 480 44.2
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 1.2e-74 284.6 434 44.7
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 2.1e-74 283.9 415 45.8
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 3.0e-73 280.0 320 51.6
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 6.7e-73 278.9 431 45.0
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 8.7e-73 278.5 440 43.6
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 2.2e-71 273.9 431 43.6
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 6.3e-71 272.3 320 51.9
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 1.1e-70 271.6 438 43.6
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 5.0e-68 262.7 437 41.9
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 1.1e-67 261.5 436 41.3
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 2.1e-66 257.3 345 47.0
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 4.6e-66 256.1 433 41.8
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 5.1e-65 252.7 342 46.5
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 2.5e-64 250.4 249 58.2
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 7.4e-64 248.8 316 47.8
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 8.2e-63 245.4 362 46.1
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 2.0e-61 240.7 398 41.7
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.8e-60 236.5 435 40.2
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 3.8e-60 236.5 438 40.0
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 5.0e-60 236.1 316 47.2
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 5.0e-60 236.1 245 55.9
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 9.4e-59 231.9 440 38.2
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 1.8e-57 227.6 248 54.0
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 1.5e-56 224.6 326 44.5
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.6e-56 223.8 399 39.8
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 2.6e-56 223.8 326 44.2
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 4.8e-55 219.5 459 38.6
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 6.3e-55 219.2 367 41.7
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 8.2e-55 218.8 349 42.4
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 3.1e-54 216.9 316 44.0
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 4.1e-54 216.5 439 37.8
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 4.1e-54 216.5 307 45.6
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.2e-53 214.9 440 38.4
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 1.7e-52 211.1 309 44.7
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 9.4e-51 205.3 248 50.8
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 4.7e-50 203.0 438 37.9
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 4.8e-47 193.0 247 49.0
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 4.8e-47 193.0 169 62.1
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 4.5e-45 186.4 434 34.8
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 5.9e-45 186.0 316 41.1
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 1.3e-44 184.9 170 58.8
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 1.1e-43 181.8 223 47.1
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 1.9e-43 181.0 346 37.0
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 3.2e-43 180.3 439 34.9
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 1.6e-42 177.9 323 39.6
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 8.0e-42 175.6 261 46.0
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 1.0e-41 175.3 168 58.3
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 6.8e-41 172.6 385 34.8
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 2.6e-40 170.6 340 35.9
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 7.0e-38 162.5 154 57.1
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 2.0e-37 161.0 241 45.2
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 2.7e-37 160.6 435 33.3
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 6.1e-34 149.4 199 46.7
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 5.2e-33 146.4 167 46.7
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 2.4e-30 137.5 254 41.7
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 2.3e-28 131.0 136 50.7
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 6.1e-26 122.9 109 65.1
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 4.1e-22 110.2 144 44.4
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 2.0e-21 107.8 111 60.4
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 5.9e-21 106.3 292 27.7
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 3.9e-20 103.6 221 31.2
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 1.8e-17 94.7 140 42.9
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 6.8e-17 92.8 202 29.7
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 3.5e-13 80.5 346 26.0
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 4.3e-11 73.6 166 33.1
AagrBONN_evm.TU.Sc2ySwM_228.4242 Anthoceros agrestis HOM05D007593 ORTHO05D009686 1.4e-09 68.6 187 25.7
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 1.4e-09 68.6 73 56.2
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 3.4e-08 63.9 144 36.8
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 7.5e-08 62.8 182 31.3
HanXRQChr12g0371121 Helianthus annuus HOM05D007593 ORTHO05D048270 2.9e-07 60.8 180 30.0
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 3.7e-07 60.5 59 61.0
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 4.9e-07 60.1 323 20.4
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 1.9e-06 58.2 91 42.9


User provided reference genes

Program Settings