Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.0e-127 461.5 598 100.0
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 2.5e-126 456.8 598 99.5
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 2.5e-126 456.8 598 99.5
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 8.6e-119 431.8 598 97.7
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 8.6e-119 431.8 598 97.7
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 4.3e-110 402.9 602 94.2
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 3.4e-107 393.3 606 92.7
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 2.2e-106 390.6 608 94.1
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 3.8e-106 389.8 604 91.9
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 4.9e-106 389.4 605 93.6
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 6.6e-103 379.0 600 91.3
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 5.6e-102 375.9 596 91.3
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 4.7e-101 372.9 602 93.4
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.2e-99 368.2 613 92.5
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 3.8e-98 363.2 605 91.6
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.1e-97 361.7 605 91.4
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 6.6e-95 352.4 229 84.7
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.3e-90 338.2 225 82.7
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 5.8e-83 312.8 607 64.9
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 1.2e-75 288.5 606 83.0
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 4.3e-62 243.4 596 76.7
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.7e-58 231.5 553 80.7
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 8.5e-58 229.2 600 75.8
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 7.2e-57 226.1 598 75.1
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 7.2e-57 226.1 617 73.6
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.2e-57 226.1 605 76.9
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.2e-57 226.1 605 76.9
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 7.2e-57 226.1 603 78.8
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 1.2e-56 225.3 595 80.2
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.4e-55 221.9 549 83.8
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 1.4e-55 221.9 551 78.9
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 3.9e-55 220.3 617 76.3
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 8.8e-55 219.2 577 77.8
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.1e-54 218.8 604 74.8
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.5e-54 218.4 555 81.4
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 3.3e-54 217.2 231 55.4
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 7.4e-54 216.1 549 80.3
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 9.7e-54 215.7 597 72.5
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 1.7e-53 214.9 599 75.3
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 4.8e-53 213.4 602 76.1
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 4.8e-53 213.4 589 81.0
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 6.3e-53 213.0 610 73.6
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 6.3e-53 213.0 186 62.9
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 8.2e-53 212.6 553 79.6
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 8.2e-53 212.6 547 79.2
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 8.2e-53 212.6 223 56.1
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 8.2e-53 212.6 567 78.3
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.1e-52 212.2 597 72.2
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.1e-52 212.2 537 81.4
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.4e-52 211.8 231 55.0
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.8e-52 211.5 553 79.6
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 2.4e-52 211.1 617 73.1
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 3.1e-52 210.7 168 66.7
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 5.3e-52 209.9 210 56.2
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 6.9e-52 209.5 217 54.4
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.9e-52 209.5 560 78.9
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.5e-51 208.4 555 82.9
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.6e-51 207.6 241 54.4
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 1.3e-50 205.3 165 65.5
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.7e-50 204.9 174 64.9
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 2.2e-50 204.5 616 74.0
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 2.2e-50 204.5 615 74.1
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.9e-50 204.1 172 64.0
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 2.9e-50 204.1 557 80.4
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 4.2e-49 200.3 217 53.5
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 9.4e-49 199.1 159 66.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 9.4e-49 199.1 229 51.5
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.2e-48 198.7 185 56.8
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 1.2e-48 198.7 547 76.4
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.2e-48 198.7 612 76.3
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 2.7e-48 197.6 188 58.0
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 4.7e-48 196.8 194 57.2
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 4.7e-48 196.8 159 64.8
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.0e-47 195.7 163 61.3
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 2.3e-47 194.5 201 56.7
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.1e-46 192.2 212 52.4
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.5e-46 191.8 162 61.1
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 7.4e-46 189.5 159 61.6
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.3e-45 188.7 176 56.8
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.3e-45 188.7 230 51.7
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.2e-45 188.0 229 50.7
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 4.8e-45 186.8 617 71.3
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.4e-44 185.3 223 52.9
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 4.1e-44 183.7 182 58.2
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 5.3e-44 183.3 176 56.8
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 5.3e-44 183.3 251 49.8
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 2.6e-43 181.0 153 63.4
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 2.6e-43 181.0 248 50.4
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 5.9e-43 179.9 190 54.2
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.3e-42 178.7 191 51.3
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.9e-41 174.9 170 56.5
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 2.1e-40 171.4 239 48.5
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 3.6e-40 170.6 220 52.3
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 4.7e-40 170.2 161 56.5
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 1.0e-39 169.1 149 63.1
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 5.2e-39 166.8 484 87.6
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 6.7e-39 166.4 188 52.7
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 2.6e-38 164.5 199 52.3
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.4e-36 158.7 123 65.0
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 2.4e-36 157.9 191 48.2
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 3.1e-36 157.5 123 64.2
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 1.6e-35 155.2 94 79.8
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.6e-35 155.2 166 47.6
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 3.5e-35 154.1 217 46.1
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.9e-33 148.3 120 60.8
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 2.7e-32 144.4 208 46.2
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 6.8e-31 139.8 157 42.7
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.0e-28 129.8 178 46.1
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.0e-28 129.8 178 46.1
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 4.2e-25 120.6 123 56.1
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.0e-23 115.9 153 41.8
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.2e-22 112.5 91 89.0
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 9.8e-22 109.4 159 44.0
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 3.3e-17 94.4 165 41.8
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.1e-16 91.7 53 86.8
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 8.0e-16 89.7 212 36.3
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.0e-15 89.4 154 42.9
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 1.8e-15 88.6 63 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 5.2e-15 87.0 71 59.2
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.0e-11 75.1 82 74.4
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 1.0e-10 72.8 127 38.6
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 5.0e-10 70.5 62 54.8
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 4.7e-08 63.9 173 33.5
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 4.7e-08 63.9 173 33.5


User provided reference genes

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