Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24863 Brassica carinata HOM05D008743 ORTHO05D000950 1.3e-55 219.5 118 100.0
BcaC05g24864 Brassica carinata HOM05D008743 ORTHO05D000950 1.3e-55 219.5 118 100.0
BolC5t29635H Brassica oleracea HOM05D008743 ORTHO05D000950 1.7e-55 219.2 118 99.2
C05p08870 Brassica napus HOM05D008743 ORTHO05D000950 5.0e-55 217.6 118 98.3
BcaC05g24946 Brassica carinata HOM05D008743 ORTHO05D000950 1.2e-45 186.4 118 86.4
C08p48740 Brassica napus HOM05D008743 ORTHO05D000950 1.4e-41 172.9 118 79.7
BcaC07g41812 Brassica carinata HOM05D008743 ORTHO05D000950 3.2e-41 171.8 118 79.7
BolC8t52413H Brassica oleracea HOM05D008743 ORTHO05D000950 3.2e-41 171.8 118 79.7
A09p64970 Brassica napus HOM05D008743 ORTHO05D000950 5.4e-41 171.0 118 78.8
BraA09t41840Z Brassica rapa HOM05D008743 ORTHO05D000950 7.1e-41 170.6 118 78.0
BcaB08g37362 Brassica carinata HOM05D008743 ORTHO05D000950 9.2e-41 170.2 118 82.2
AT1G10585 Arabidopsis thaliana HOM05D008743 ORTHO05D000950 3.9e-39 164.9 117 77.8
AL1G21410 Arabidopsis lyrata HOM05D008743 ORTHO05D000950 2.5e-38 162.2 116 75.9
BcaC07g38575 Brassica carinata HOM05D008743 ORTHO05D000950 3.3e-38 161.8 119 77.3
Sp1g09250 Schrenkiella parvula HOM05D008743 ORTHO05D000950 3.3e-38 161.8 119 78.2
A08p33890 Brassica napus HOM05D008743 ORTHO05D000950 5.6e-38 161.0 119 77.3
BraA08t35303Z Brassica rapa HOM05D008743 ORTHO05D000950 5.6e-38 161.0 119 77.3
BolC8t49016H Brassica oleracea HOM05D008743 ORTHO05D000950 7.3e-38 160.6 119 76.5
A06p07380 Brassica napus HOM05D008743 ORTHO05D000950 9.5e-38 160.2 118 77.1
C08p13810 Brassica napus HOM05D008743 ORTHO05D000950 9.5e-38 160.2 119 76.5
BraA06t23942Z Brassica rapa HOM05D008743 ORTHO05D000950 9.5e-38 160.2 118 77.1
AL1G21404 Arabidopsis lyrata HOM05D008743 ORTHO05D000950 4.7e-37 157.9 126 71.4
A09p64980 Brassica napus HOM05D008743 ORTHO05D000950 6.2e-37 157.5 119 75.6
C05p08860 Brassica napus HOM05D008743 ORTHO05D000950 1.1e-36 156.8 118 75.4
BraA09t41841Z Brassica rapa HOM05D008743 ORTHO05D000950 1.1e-36 156.8 119 75.6
BcaC07g41813 Brassica carinata HOM05D008743 ORTHO05D000950 1.8e-36 156.0 119 74.8
C08p48750 Brassica napus HOM05D008743 ORTHO05D000950 1.8e-36 156.0 119 74.8
BolC8t52415H Brassica oleracea HOM05D008743 ORTHO05D000950 1.8e-36 156.0 119 74.8
AT1G10586 Arabidopsis thaliana HOM05D008743 ORTHO05D000950 3.1e-36 155.2 116 74.1
BcaC05g24945 Brassica carinata HOM05D008743 ORTHO05D000950 5.2e-36 154.5 119 75.6
BcaC07g38611 Brassica carinata HOM05D008743 ORTHO05D000950 1.2e-35 153.3 119 72.3
Carub.0001s1003 Capsella rubella HOM05D008743 ORTHO05D000950 9.9e-35 150.2 118 70.3
Carub.0001s1004 Capsella rubella HOM05D008743 ORTHO05D000950 1.3e-34 149.8 116 70.7
BolC5t29634H Brassica oleracea HOM05D008743 ORTHO05D000950 1.7e-34 149.4 118 72.9
BcaC07g38610 Brassica carinata HOM05D002303 ORTHO05D000950 1.2e-32 143.3 117 68.4
BcaB08g37360 Brassica carinata HOM05D008743 ORTHO05D000950 2.1e-32 142.5 119 68.1
BcaB08g37361 Brassica carinata HOM05D008743 ORTHO05D000950 2.1e-32 142.5 119 68.1
CARHR010750 Cardamine hirsuta HOM05D008743 ORTHO05D000950 6.0e-32 141.0 119 68.1
A06p07390 Brassica napus HOM05D008743 ORTHO05D000950 2.8e-29 132.1 70 97.1
BraA06t23943Z Brassica rapa HOM05D008743 ORTHO05D000950 2.8e-29 132.1 70 97.1
Thhalv10009819m.g Eutrema salsugineum HOM05D008743 ORTHO05D000950 1.8e-20 102.8 118 56.8
THA.LOC104816774 Tarenaya hassleriana HOM05D008743 ORTHO05D000950 4.5e-19 98.2 118 50.0
Dinv15296 Davidia involucrata HOM05D001277 ORTHO05D000950 6.7e-15 84.3 116 41.4
Dinv27986 Davidia involucrata HOM05D001277 ORTHO05D000950 1.1e-14 83.6 116 41.4
Dinv24853 Davidia involucrata HOM05D001277 ORTHO05D000950 1.9e-14 82.8 114 42.1
Dinv24856 Davidia involucrata HOM05D001277 ORTHO05D000950 5.6e-14 81.3 115 39.1
Dinv27918 Davidia involucrata HOM05D001277 ORTHO05D000950 2.8e-13 79.0 117 40.2
Prupe.5G175300 Prunus persica HOM05D001277 ORTHO05D000950 1.4e-12 76.6 124 34.7
Atru.chr11.2024 Acer truncatum HOM05D001277 ORTHO05D000950 1.8e-12 76.3 118 39.0
Dinv15297 Davidia involucrata HOM05D001277 ORTHO05D000950 1.8e-12 76.3 120 41.7
Glyma.05G036800 Glycine max HOM05D001277 ORTHO05D000950 3.1e-12 75.5 118 36.4
Eucgr.B00366 Eucalyptus grandis HOM05D001277 ORTHO05D000950 4.0e-12 75.1 129 36.4
Nitab4.5_0003857g0010 Nicotiana tabacum HOM05D001277 ORTHO05D000950 9.0e-12 73.9 120 35.0
Lj4g0004622 Lotus japonicus HOM05D001277 ORTHO05D000950 2.0e-11 72.8 116 36.2
FAN13G2787 Fragaria x ananassa HOM05D001277 ORTHO05D000950 2.6e-11 72.4 129 34.9
Dinv15299 Davidia involucrata HOM05D001277 ORTHO05D000950 3.4e-11 72.0 117 39.3
RcHm_v2.0_Chr7g0193761 Rosa chinensis HOM05D001277 ORTHO05D000950 3.4e-11 72.0 128 33.6
FAN04G0760 Fragaria x ananassa HOM05D001277 ORTHO05D000950 5.8e-11 71.2 129 33.3
Prupe.5G175200 Prunus persica HOM05D001277 ORTHO05D000950 5.8e-11 71.2 124 33.9
Nitab4.5_0000852g0080 Nicotiana tabacum HOM05D001277 ORTHO05D000950 7.6e-11 70.9 120 35.8
FvH4_5g05180 Fragaria vesca HOM05D001277 ORTHO05D000950 1.3e-10 70.1 129 32.6
FAN18G1626 Fragaria x ananassa HOM05D001277 ORTHO05D000950 1.3e-10 70.1 129 32.6
FAN08G2507 Fragaria x ananassa HOM05D001277 ORTHO05D000950 1.7e-10 69.7 129 33.3
Atru.chr3.2847 Acer truncatum HOM05D001277 ORTHO05D000950 2.2e-10 69.3 116 33.6
Cpa.g.sc69.31 Carica papaya HOM05D001277 ORTHO05D000950 2.2e-10 69.3 116 37.9
Dinv24854 Davidia involucrata HOM05D001277 ORTHO05D000950 2.2e-10 69.3 88 39.8
Peaxi162Scf00017g02837 Petunia axillaris HOM05D001277 ORTHO05D000950 2.2e-10 69.3 123 38.2
Solyc03g114233.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 2.2e-10 69.3 114 36.8
FAN18G4206 Fragaria x ananassa HOM05D001277 ORTHO05D000950 2.9e-10 68.9 129 32.6
Lj3A1053G40 Lonicera japonica HOM05D001277 ORTHO05D000950 2.9e-10 68.9 84 39.3
MD14G1182700 Malus domestica HOM05D001277 ORTHO05D000950 2.9e-10 68.9 124 31.5
Solyc03g114230.2 Solanum lycopersicum HOM05D001277 ORTHO05D000950 2.9e-10 68.9 120 34.2
PGSC0003DMG400024597 Solanum tuberosum HOM05D001277 ORTHO05D000950 2.9e-10 68.9 120 33.3
SalBow2G0128 Salvia bowleyana HOM05D001277 ORTHO05D000950 3.8e-10 68.6 119 35.3
Cpa.g.sc69.33 Carica papaya HOM05D001277 ORTHO05D000950 4.9e-10 68.2 116 37.1
Cc11_g14670 Coffea canephora HOM05D001277 ORTHO05D000950 6.4e-10 67.8 110 39.1
Sopen03g033330 Solanum pennellii HOM05D001277 ORTHO05D000950 6.4e-10 67.8 120 33.3
Ciclev10018120m.g Citrus clementina HOM05D001277 ORTHO05D000950 8.4e-10 67.4 106 34.0
Gohir.D04G178400 Gossypium hirsutum HOM05D001277 ORTHO05D000950 8.4e-10 67.4 113 32.7
Atru.chr9.2450 Acer truncatum HOM05D001277 ORTHO05D000950 1.1e-09 67.0 126 34.1
Ah.02g110450 Amaranthus hybridus HOM05D001277 ORTHO05D000950 1.1e-09 67.0 116 32.8
Haze_07498 Corylus avellana HOM05D001277 ORTHO05D000950 1.1e-09 67.0 121 36.4
GSVIVG01007772001 Vitis vinifera HOM05D001277 ORTHO05D000950 1.1e-09 67.0 125 32.8
VMungo1215G1091 Vigna mungo HOM05D001277 ORTHO05D000950 1.4e-09 66.6 116 33.6
Cfa019101 Carpinus fangiana HOM05D001277 ORTHO05D000950 1.9e-09 66.2 121 35.5
CiPaw.11G028100 Carya illinoinensis HOM05D001277 ORTHO05D000950 1.9e-09 66.2 113 33.6
Phvul.009G179600 Phaseolus vulgaris HOM05D001277 ORTHO05D000950 1.9e-09 66.2 115 30.4
Gohir.D02G117600 Gossypium hirsutum HOM05D001277 ORTHO05D000950 2.4e-09 65.9 112 34.8
Gorai.005G136000 Gossypium raimondii HOM05D001277 ORTHO05D000950 2.4e-09 65.9 112 34.8
Gohir.A03G096500 Gossypium hirsutum HOM05D001277 ORTHO05D000950 3.2e-09 65.5 123 34.1
Gohir.A04G135300 Gossypium hirsutum HOM05D001277 ORTHO05D000950 3.2e-09 65.5 113 31.9
Nn3g16897 Nelumbo nucifera HOM05D001277 ORTHO05D000950 3.2e-09 65.5 120 32.5
Thecc.03G010300 Theobroma cacao HOM05D001277 ORTHO05D000950 3.2e-09 65.5 112 34.8
VMungo1309G3071 Vigna mungo HOM05D001277 ORTHO05D000950 3.2e-09 65.5 115 30.4
Cpa.g.sc124.41 Carica papaya HOM05D001277 ORTHO05D000950 4.2e-09 65.1 118 32.2
CiPaw.11G028000 Carya illinoinensis HOM05D001277 ORTHO05D000950 4.2e-09 65.1 113 35.4
Hma1.2p1_2175F.1_g316090 Hydrangea macrophylla HOM05D001277 ORTHO05D000950 4.2e-09 65.1 119 32.8
Dinv24857 Davidia involucrata HOM05D001277 ORTHO05D000950 5.5e-09 64.7 126 31.0
Glyma.U035800 Glycine max HOM05D001277 ORTHO05D000950 5.5e-09 64.7 117 32.5
QL10p011975 Quercus lobata HOM05D001277 ORTHO05D000950 5.5e-09 64.7 116 33.6
TAR629G0294 Trochodendron aralioides HOM05D001277 ORTHO05D000950 5.5e-09 64.7 118 33.1
CANSAT80G1563 Cannabis sativa HOM05D001277 ORTHO05D000950 7.1e-09 64.3 93 34.4
MELO3C002257.2 Cucumis melo HOM05D001277 ORTHO05D000950 7.1e-09 64.3 120 30.8
COL.COLO4_07560 Corchorus olitorius HOM05D001277 ORTHO05D000950 9.3e-09 63.9 123 31.7
arahy.Tifrunner.gnm1.ann1.YFEV2R Arachis hypogaea HOM05D001277 ORTHO05D000950 1.2e-08 63.5 114 29.8
CAN.G781.21 Capsicum annuum HOM05D001277 ORTHO05D000950 1.2e-08 63.5 120 32.5
Cfa019102 Carpinus fangiana HOM05D001277 ORTHO05D000950 1.2e-08 63.5 120 30.8
Ciclev10017617m.g Citrus clementina HOM05D001277 ORTHO05D000950 1.2e-08 63.5 106 34.0
Ciclev10022480m.g Citrus clementina HOM05D001277 ORTHO05D000950 1.2e-08 63.5 122 33.6
Duzib205G0114 Durio zibethinus HOM05D001277 ORTHO05D000950 1.2e-08 63.5 117 32.5
Rhsim12G0163800 Rhododendron simsii HOM05D001277 ORTHO05D000950 1.2e-08 63.5 126 31.7
Actinidia07315 Actinidia chinensis HOM05D001277 ORTHO05D000950 1.6e-08 63.2 119 33.6
Hma1.2p1_0536F.1_g174130 Hydrangea macrophylla HOM05D001277 ORTHO05D000950 1.6e-08 63.2 115 34.8
MD06G1176300 Malus domestica HOM05D001277 ORTHO05D000950 1.6e-08 63.2 88 35.2
Phvul.003G199500 Phaseolus vulgaris HOM05D001277 ORTHO05D000950 1.6e-08 63.2 111 35.1
Thecc.02G248800 Theobroma cacao HOM05D001277 ORTHO05D000950 1.6e-08 63.2 115 38.3
HPP92_004859 Vanilla planifolia HOM05D001277 ORTHO05D000950 1.6e-08 63.2 118 30.5
Actinidia33058 Actinidia chinensis HOM05D001277 ORTHO05D000950 2.1e-08 62.8 118 31.4
Dinv20667 Davidia involucrata HOM05D001277 ORTHO05D000950 2.1e-08 62.8 120 29.2
Potri.015G074500 Populus trichocarpa HOM05D001277 ORTHO05D000950 2.1e-08 62.8 117 32.5
Sabra12G0056700 Salix brachista HOM05D001277 ORTHO05D000950 2.1e-08 62.8 123 34.1
SalBow2G2868 Salvia bowleyana HOM05D001277 ORTHO05D000950 2.1e-08 62.8 113 32.7
Atru.chr3.2850 Acer truncatum HOM05D001277 ORTHO05D000950 2.7e-08 62.4 83 39.8
Potri.012G079100 Populus trichocarpa HOM05D001277 ORTHO05D000950 2.7e-08 62.4 123 34.1
Solyc03g114237.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 2.7e-08 62.4 119 33.6
arahy.Tifrunner.gnm1.ann1.MB81X2 Arachis hypogaea HOM05D001277 ORTHO05D000950 3.5e-08 62.0 114 28.9
CAN.G781.19 Capsicum annuum HOM05D001277 ORTHO05D000950 3.5e-08 62.0 120 35.0
Duzib068G1427 Durio zibethinus HOM05D001277 ORTHO05D000950 3.5e-08 62.0 124 32.3
Lsat_1_v5_gn_8_157101 Lactuca sativa HOM05D001277 ORTHO05D000950 3.5e-08 62.0 117 34.2
Manes.06G103800 Manihot esculenta HOM05D001277 ORTHO05D000950 3.5e-08 62.0 117 33.3
Manes.12G028900 Manihot esculenta HOM05D001277 ORTHO05D000950 3.5e-08 62.0 116 32.8
TWI36G0357 Tripterygium wilfordii HOM05D001277 ORTHO05D000950 3.5e-08 62.0 121 37.2
CSS0033336 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 4.6e-08 61.6 117 30.8
Sabra15G0098400 Salix brachista HOM05D001277 ORTHO05D000950 4.6e-08 61.6 118 32.2
CiPaw.12G025400 Carya illinoinensis HOM05D001277 ORTHO05D000950 7.9e-08 60.8 127 30.7
Cc04_g13690 Coffea canephora HOM05D001277 ORTHO05D000950 7.9e-08 60.8 120 30.8
Thecc.02G248700 Theobroma cacao HOM05D001277 ORTHO05D000950 7.9e-08 60.8 111 33.3
MSTRG.9675 Avicennia marina HOM05D001277 ORTHO05D000950 1.0e-07 60.5 118 34.7
COL.COLO4_36769 Corchorus olitorius HOM05D001277 ORTHO05D000950 1.0e-07 60.5 114 36.0
Glyma.04G182600 Glycine max HOM05D001277 ORTHO05D000950 1.0e-07 60.5 114 29.8
PGR083G0118 Punica granatum HOM05D001277 ORTHO05D000950 1.0e-07 60.5 121 31.4
PGSC0003DMG400024598 Solanum tuberosum HOM05D001277 ORTHO05D000950 1.0e-07 60.5 66 43.9
Haze_07499 Corylus avellana HOM05D001277 ORTHO05D000950 1.3e-07 60.1 118 31.4
DCAR_026126 Daucus carota HOM05D001277 ORTHO05D000950 1.3e-07 60.1 116 29.3
Duzib248G0856 Durio zibethinus HOM05D001277 ORTHO05D000950 1.3e-07 60.1 112 36.6
Duzib268G1467 Durio zibethinus HOM05D001277 ORTHO05D000950 1.3e-07 60.1 116 33.6
TWI36G1270 Tripterygium wilfordii HOM05D001277 ORTHO05D000950 1.8e-07 59.7 123 37.4
CSS0006867 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 2.3e-07 59.3 95 38.9
Eucgr.K02851 Eucalyptus grandis HOM05D001277 ORTHO05D000950 2.3e-07 59.3 124 30.6
TWI36G0964 Tripterygium wilfordii HOM05D001277 ORTHO05D000950 2.3e-07 59.3 123 35.8
TWI36G1746 Tripterygium wilfordii HOM05D001277 ORTHO05D000950 2.3e-07 59.3 123 35.8
BolC8t48978H Brassica oleracea HOM05D055781 ORTHO05D000950 3.0e-07 58.9 40 67.5
CSS0018561 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 3.0e-07 58.9 118 28.0
Eucgr.K02849 Eucalyptus grandis HOM05D001277 ORTHO05D000950 3.0e-07 58.9 124 30.6
MBI10_g11074_MAGBIO Magnolia biondii HOM05D001277 ORTHO05D000950 3.0e-07 58.9 119 31.1
CiPaw.12G025600 Carya illinoinensis HOM05D001277 ORTHO05D000950 3.9e-07 58.5 127 32.3
Manes.14G067000 Manihot esculenta HOM05D001277 ORTHO05D000950 3.9e-07 58.5 113 31.9
Sed0012989 Sechium edule HOM05D001277 ORTHO05D000950 3.9e-07 58.5 129 27.1
Aqoxy3G01012 Aquilegia oxysepala HOM05D001277 ORTHO05D000950 5.1e-07 58.2 120 30.0
CiPaw.11G027900 Carya illinoinensis HOM05D001277 ORTHO05D000950 5.1e-07 58.2 113 32.7
Ciclev10024201m.g Citrus clementina HOM05D001277 ORTHO05D000950 5.1e-07 58.2 120 33.3
Hma1.2p1_0176F.1_g077580 Hydrangea macrophylla HOM05D001277 ORTHO05D000950 5.1e-07 58.2 82 36.6
BolC8t48979H Brassica oleracea HOM05D008743 ORTHO05D000950 8.7e-07 57.4 73 54.8
ClCG01G013070 Citrullus lanatus HOM05D001277 ORTHO05D000950 8.7e-07 57.4 82 32.9
Duzib248G0806 Durio zibethinus HOM05D001277 ORTHO05D000950 8.7e-07 57.4 111 32.4
vmacro16602 Vaccinium macrocarpon HOM05D001277 ORTHO05D000950 8.7e-07 57.4 128 28.1
Ciclev10018141m.g Citrus clementina HOM05D001277 ORTHO05D000950 1.1e-06 57.0 111 28.8
TAR680G0004 Trochodendron aralioides HOM05D001277 ORTHO05D000950 1.1e-06 57.0 117 29.1
Eucgr.K02854 Eucalyptus grandis HOM05D001277 ORTHO05D000950 1.5e-06 56.6 124 29.0
Nn3g16890 Nelumbo nucifera HOM05D001277 ORTHO05D000950 1.5e-06 56.6 118 31.4
CSS0029869 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 1.9e-06 56.2 82 34.1
TAR622G0406 Trochodendron aralioides HOM05D001277 ORTHO05D000950 1.9e-06 56.2 117 29.1
Eucgr.K02855 Eucalyptus grandis HOM05D001277 ORTHO05D000950 2.5e-06 55.8 123 29.3
Nitab4.5_0000852g0070 Nicotiana tabacum HOM05D001277 ORTHO05D000950 2.5e-06 55.8 99 36.4
ATR0737G008 Amborella trichopoda HOM05D001277 ORTHO05D000950 3.3e-06 55.5 115 28.7
Zm00001eb126610 Zea mays HOM05D001277 ORTHO05D000950 3.3e-06 55.5 73 39.7
Actinidia07314 Actinidia chinensis HOM05D001277 ORTHO05D000950 4.3e-06 55.1 119 29.4
CiPaw.12G025500 Carya illinoinensis HOM05D001277 ORTHO05D000950 5.6e-06 54.7 126 31.0
COL.COLO4_36774 Corchorus olitorius HOM05D001277 ORTHO05D000950 5.6e-06 54.7 113 30.1
DCAR_010194 Daucus carota HOM05D001277 ORTHO05D000950 5.6e-06 54.7 116 26.7
Nn3g16898 Nelumbo nucifera HOM05D001277 ORTHO05D000950 5.6e-06 54.7 117 29.9
COL.COLO4_10879 Corchorus olitorius HOM05D001277 ORTHO05D000950 7.4e-06 54.3 114 30.7
Os01g0108400 Oryza sativa ssp. japonica HOM05D001277 ORTHO05D000950 7.4e-06 54.3 74 36.5


User provided reference genes

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