Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 3.1e-273 944.5 471 100.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.3e-268 928.3 469 98.3
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-267 925.6 469 98.3
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-262 909.1 471 96.0
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.7e-261 904.8 471 94.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.7e-255 885.6 469 92.1
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.5e-254 881.7 469 91.9
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.1e-253 878.6 465 91.8
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 6.1e-253 877.1 465 91.8
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.4e-252 875.9 469 91.0
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 8.8e-252 873.2 469 90.6
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.5e-251 872.5 470 90.2
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-251 872.5 470 90.2
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-251 872.5 470 90.2
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.3e-250 867.1 470 89.6
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-249 866.3 470 89.6
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 6.8e-236 820.5 460 88.0
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.7e-218 761.5 405 90.9
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.1e-212 741.9 460 78.3
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.0e-208 727.6 462 75.5
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.5e-190 669.8 461 67.5
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.3e-189 666.8 465 67.1
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.5e-187 659.8 449 68.6
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 7.6e-187 657.5 463 66.3
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 7.6e-187 657.5 457 68.1
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.3e-186 656.8 460 66.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.9e-186 655.6 465 66.5
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 3.8e-186 655.2 463 66.5
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.1e-185 653.7 464 65.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.9e-185 652.9 468 65.4
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.4e-185 652.5 460 65.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 4.2e-185 651.7 459 67.8
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.3e-185 650.6 464 65.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.2e-184 650.2 464 65.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.1e-184 649.4 463 65.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.6e-184 648.3 473 64.9
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.0e-183 647.1 451 66.5
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.0e-183 647.1 465 64.9
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.0e-183 647.1 466 65.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 6.7e-183 644.4 465 64.7
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 6.7e-183 644.4 462 65.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 6.7e-183 644.4 470 64.7
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.3e-182 641.7 465 64.7
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.6e-181 639.8 459 66.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.6e-181 639.8 454 66.3
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 3.7e-181 638.6 465 65.2
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.2e-181 637.9 458 65.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.4e-180 636.7 462 64.5
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.8e-180 636.3 471 66.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.8e-180 636.3 461 65.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 2.4e-180 636.0 464 63.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.1e-180 635.6 438 67.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.1e-180 635.6 495 61.4
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.0e-180 635.2 454 65.9
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.9e-180 634.4 457 65.2
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 9.0e-180 634.0 457 63.9
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 9.0e-180 634.0 462 63.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.2e-179 633.6 465 64.3
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-179 632.9 438 67.1
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.0e-179 632.9 467 64.0
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.0e-179 632.9 491 61.3
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.6e-179 632.5 467 64.0
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.6e-179 632.5 467 64.0
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.6e-179 632.5 465 64.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.6e-179 632.5 441 65.5
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 3.4e-179 632.1 448 65.4
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 3.4e-179 632.1 458 64.4
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-179 632.1 460 64.6
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.4e-179 632.1 466 64.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 9.9e-179 630.6 464 64.9
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.3e-178 630.2 461 63.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.2e-178 629.4 462 64.3
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.2e-178 629.4 468 63.5
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.9e-178 629.0 459 64.7
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 8.4e-178 627.5 464 64.9
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.4e-177 625.9 453 64.7
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.2e-177 625.5 458 65.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.2e-177 625.2 460 64.3
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 9.3e-177 624.0 477 62.1
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.6e-176 623.2 457 64.1
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.7e-176 622.5 460 63.7
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.7e-176 622.5 492 60.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 7.9e-176 620.9 469 64.0
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 7.9e-176 620.9 459 64.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.0e-175 620.5 431 66.6
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.3e-175 620.2 440 65.5
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.8e-175 619.8 435 67.4
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.5e-174 615.9 461 61.8
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.3e-174 615.5 458 64.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 2.1e-173 612.8 496 58.9
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 2.1e-173 612.8 422 67.8
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.1e-172 610.5 462 61.5
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.4e-172 610.1 468 62.6
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.8e-172 609.8 461 62.7
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 3.1e-172 609.0 455 62.4
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.1e-172 609.0 433 64.2
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.0e-172 608.6 448 64.1
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.2e-171 607.1 466 60.1
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.5e-171 606.7 468 62.6
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.1e-169 600.5 441 63.5
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 5.5e-169 598.2 460 62.4
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 7.1e-169 597.8 433 63.7
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.6e-168 596.7 469 61.4
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 3.5e-168 595.5 433 64.7
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.0e-167 594.0 513 56.3
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.5e-166 590.1 556 52.5
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.8e-165 585.1 470 60.2
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.8e-164 583.2 433 62.1
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.1e-164 582.0 430 65.6
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.9e-164 581.3 459 61.0
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.9e-164 581.3 448 62.1
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.0e-163 579.7 403 66.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.4e-163 578.9 494 57.9
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.4e-163 578.9 481 59.3
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.3e-162 577.0 452 60.8
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.9e-162 575.9 413 66.3
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 2.9e-162 575.9 448 61.2
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.9e-161 573.2 471 59.2
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.2e-161 572.4 486 57.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 4.6e-160 568.5 455 60.2
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.7e-159 564.7 379 67.5
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.7e-159 564.7 379 67.5
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 6.7e-159 564.7 463 57.2
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 7.4e-158 561.2 472 59.5
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 3.7e-157 558.9 464 58.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.4e-156 557.0 464 58.8
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.3e-156 555.1 601 48.4
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 5.9e-155 551.6 518 53.3
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 5.9e-155 551.6 453 60.5
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.9e-154 549.3 465 59.8
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-152 543.9 441 58.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.1e-152 543.1 417 63.8
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.0e-151 540.8 415 62.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.6e-136 490.3 471 53.5
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 3.7e-133 479.2 479 50.1
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.7e-130 470.3 484 50.4
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 5.0e-130 468.8 437 52.4
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.8e-124 450.3 377 59.2
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.2e-123 447.6 449 51.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 7.7e-123 444.9 335 65.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.2e-120 437.6 455 47.0
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.0e-114 417.9 411 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.6e-110 403.3 514 42.6
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 3.3e-97 359.8 300 58.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.2e-94 351.3 267 63.7
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.4e-76 290.4 297 49.8
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.6e-70 270.4 176 67.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.6e-64 251.1 189 64.6
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.0e-50 205.3 213 51.2
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 9.4e-44 182.2 151 57.6
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 6.7e-42 176.0 634 26.5
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 6.9e-39 166.0 117 63.2
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 2.0e-38 164.5 298 34.2
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 3.7e-32 143.7 101 65.3
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.6e-30 137.5 148 50.7
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 5.7e-25 119.8 75 73.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 7.4e-25 119.4 97 58.8
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 2.2e-24 117.9 99 58.6
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.1e-23 115.5 112 53.6
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.4e-23 115.2 112 53.6
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 3.1e-23 114.0 70 85.7
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.2e-20 103.6 86 54.7
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 2.3e-18 97.8 63 66.7
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.2e-18 96.7 71 60.6
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.7e-13 81.6 62 59.7
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-12 79.0 46 76.1
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.8e-10 69.7 45 66.7
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.9e-08 63.5 57 50.9
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 6.3e-08 63.2 39 71.8
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-07 62.4 46 63.0
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.4e-07 62.0 46 63.0


User provided reference genes

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