Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 3.1e-76 290.4 231 100.0
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 3.7e-61 240.4 231 90.9
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 4.8e-61 240.0 231 90.0
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 7.7e-59 232.6 234 88.0
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 1.0e-58 232.3 239 85.8
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 5.0e-58 229.9 234 87.2
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 4.6e-56 223.4 239 84.5
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 2.3e-55 221.1 239 82.8
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.5e-54 218.4 239 83.3
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 2.8e-53 214.2 241 83.8
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 2.2e-42 177.9 236 75.8
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 3.6e-40 170.6 240 72.9
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 2.5e-25 121.3 161 49.1
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.2e-24 119.0 153 49.0
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 4.7e-24 117.1 261 55.2
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 4.8e-21 107.1 179 42.5
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 5.4e-20 103.6 173 42.2
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 7.0e-20 103.2 154 43.5
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 2.0e-19 101.7 152 46.1
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 2.7e-19 101.3 257 58.0
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 4.5e-19 100.5 254 56.3
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 1.3e-18 99.0 174 40.2
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.7e-18 98.6 259 54.4
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 1.7e-18 98.6 248 59.7
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 5.0e-18 97.1 64 71.9
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 8.6e-18 96.3 257 57.2
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 8.6e-18 96.3 174 39.1
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 2.5e-17 94.7 157 76.4
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 2.5e-17 94.7 254 55.1
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 7.2e-17 93.2 153 39.9
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 7.2e-17 93.2 239 59.0
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 7.2e-17 93.2 239 56.1
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 2.1e-16 91.7 243 60.1
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 2.8e-16 91.3 169 38.5
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 3.6e-16 90.9 142 83.8
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 3.6e-16 90.9 200 67.5
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 3.6e-16 90.9 175 39.4
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 4.7e-16 90.5 227 61.2
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 6.1e-16 90.1 154 38.3
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 6.1e-16 90.1 200 66.5
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 8.0e-16 89.7 206 58.3
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 8.0e-16 89.7 129 45.7
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 1.8e-15 88.6 159 39.6
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.8e-15 88.6 176 72.7
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.8e-15 88.6 176 73.3
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 2.3e-15 88.2 248 54.4
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 2.3e-15 88.2 150 42.0
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 2.3e-15 88.2 99 52.5
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 4.0e-15 87.4 166 39.2
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 5.2e-15 87.0 150 41.3
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 5.2e-15 87.0 147 40.8
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 5.2e-15 87.0 145 41.4
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 6.8e-15 86.7 167 74.3
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 6.8e-15 86.7 174 72.4
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 6.8e-15 86.7 139 64.0
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 8.9e-15 86.3 164 40.9
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 1.2e-14 85.9 166 37.3
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.2e-14 85.9 166 37.3
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 2.0e-14 85.1 142 77.5
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 4.4e-14 84.0 251 54.2
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 4.4e-14 84.0 156 75.0
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 5.7e-14 83.6 271 53.9
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 5.7e-14 83.6 271 53.9
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 1.3e-13 82.4 155 78.1
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.7e-13 82.0 138 83.3
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 2.8e-13 81.3 247 55.5
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.4e-12 79.0 143 37.8
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 2.4e-12 78.2 83 54.2
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 3.2e-12 77.8 99 47.5
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 5.4e-12 77.0 154 37.7
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 7.0e-12 76.6 197 45.2
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 7.0e-12 76.6 131 87.0
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 7.0e-12 76.6 242 58.3
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.2e-11 75.9 182 66.5
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 3.5e-11 74.3 246 54.1
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 3.5e-11 74.3 72 51.4
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 3.5e-11 74.3 69 53.6
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.5e-11 73.9 111 44.1
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 7.8e-11 73.2 83 47.0
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.0e-10 72.8 217 56.7
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 1.0e-10 72.8 61 57.4
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.0e-10 72.8 125 43.2
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 1.3e-10 72.4 140 37.9
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 3.9e-10 70.9 162 35.2
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 5.0e-10 70.5 63 58.7
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 5.0e-10 70.5 89 47.2
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.6e-10 70.1 112 41.1
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.6e-10 69.7 76 53.9
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 8.6e-10 69.7 159 34.6
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.5e-09 68.9 174 36.8
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.5e-09 68.9 124 42.7
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.5e-09 68.2 83 48.2
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 3.3e-09 67.8 96 43.8
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 5.6e-09 67.0 78 46.2
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 2.1e-08 65.1 107 40.2
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 4.7e-08 63.9 110 40.0
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.1e-08 63.5 165 33.3
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 1.4e-07 62.4 124 37.1
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.4e-07 62.4 81 43.2
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.4e-07 62.4 81 43.2
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 1.4e-07 62.4 124 38.7
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 1.8e-07 62.0 124 36.3
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 1.8e-07 62.0 42 61.9
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 3.1e-07 61.2 74 50.0
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 4.0e-07 60.8 128 36.7
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 8.9e-07 59.7 57 49.1
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 3.4e-06 57.8 56 48.2
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 7.5e-06 56.6 163 32.5


User provided reference genes

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