Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 1.1e-131 473.4 252 100.0
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 3.9e-129 464.9 252 98.0
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.3e-126 455.7 253 96.4
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 5.8e-125 451.1 273 90.5
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 7.5e-125 450.7 276 89.1
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.5e-122 441.8 277 88.1
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 4.7e-119 431.4 249 90.8
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 3.4e-109 398.7 253 84.6
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 2.4e-102 375.9 252 79.0
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 9.9e-101 370.5 252 77.4
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 1.1e-99 367.1 251 78.1
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 8.7e-97 357.5 247 76.5
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 1.6e-90 336.7 245 74.3
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 2.1e-90 336.3 197 90.4
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 2.4e-86 322.8 215 80.0
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.5e-72 276.9 249 61.4
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 8.5e-52 208.0 241 46.9
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.3e-47 194.1 241 45.2
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 4.1e-46 189.1 232 47.0
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 1.0e-44 184.5 243 45.3
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 1.7e-44 183.7 240 47.5
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.0e-44 182.2 239 43.9
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.9e-43 180.3 249 44.2
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 4.2e-43 179.1 231 45.9
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.6e-42 177.2 231 44.6
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 1.6e-42 177.2 240 42.1
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 3.6e-42 176.0 240 43.3
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.0e-42 174.9 241 44.4
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.8e-41 173.7 250 42.8
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.0e-41 172.9 241 44.4
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 3.0e-41 172.9 233 44.6
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 5.2e-41 172.2 236 44.5
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 6.8e-41 171.8 241 44.0
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 8.8e-41 171.4 237 41.8
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 3.4e-40 169.5 236 43.2
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 4.4e-40 169.1 233 42.5
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 9.8e-40 167.9 235 46.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.8e-39 166.4 198 46.0
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 4.8e-39 165.6 229 43.7
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 4.8e-39 165.6 231 44.2
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 4.8e-39 165.6 236 43.2
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.8e-38 163.7 226 44.7
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 4.1e-38 162.5 232 45.3
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 4.1e-38 162.5 235 41.3
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 5.4e-38 162.2 229 41.5
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.0e-36 157.9 234 39.7
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 1.3e-36 157.5 187 48.1
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 2.3e-36 156.8 200 49.0
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 2.9e-36 156.4 240 42.9
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 5.0e-36 155.6 235 40.4
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 6.6e-36 155.2 237 43.0
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 6.6e-36 155.2 222 43.2
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 8.6e-36 154.8 228 42.1
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.5e-35 154.1 165 52.1
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 1.5e-35 154.1 313 36.1
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.9e-35 153.7 226 42.5
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.5e-35 153.3 228 41.2
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 7.2e-35 151.8 182 48.9
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 7.2e-35 151.8 248 39.9
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.6e-34 150.6 210 44.8
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.6e-34 150.6 227 41.0
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 8.0e-34 148.3 179 45.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.4e-33 147.5 254 40.6
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.8e-33 147.1 188 45.2
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 1.8e-33 147.1 231 40.3
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 2.3e-33 146.7 232 41.4
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 5.2e-33 145.6 224 40.6
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 6.8e-33 145.2 248 39.9
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.2e-32 144.4 225 41.3
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 2.6e-32 143.3 290 36.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 4.4e-32 142.5 229 39.3
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 4.9e-31 139.0 189 42.3
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 6.3e-31 138.7 258 36.4
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.8e-30 137.1 248 37.5
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 3.2e-30 136.3 257 35.8
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.2e-29 134.4 174 43.7
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.3e-28 130.2 296 33.4
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 3.3e-27 126.3 266 34.6
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 2.1e-26 123.6 246 35.8
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 3.6e-26 122.9 118 54.2
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 4.0e-25 119.4 227 37.4
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 5.2e-25 119.0 341 31.4
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 2.0e-24 117.1 183 38.3
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 2.6e-24 116.7 134 46.3
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.6e-24 116.7 181 40.9
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 2.6e-24 116.7 239 37.7
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.4e-24 116.3 236 36.9
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 7.5e-24 115.2 134 44.8
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.1e-22 111.3 135 47.4
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 3.2e-22 109.8 182 38.5
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 4.1e-22 109.4 173 40.5
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 7.8e-21 105.1 216 34.3
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 6.6e-20 102.1 311 29.6
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 2.8e-18 96.7 147 42.2
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 4.4e-16 89.4 237 30.0
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 4.4e-16 89.4 202 32.2
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 2.9e-15 86.7 132 37.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 8.3e-15 85.1 132 36.4
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 9.2e-14 81.6 176 31.2
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 2.3e-12 77.0 139 38.8


User provided reference genes

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