Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 4.6e-67 257.7 124 100.0
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.6e-35 152.9 79 92.4
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 4.7e-35 151.4 113 70.8
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 4.7e-35 151.4 113 70.8
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 4.7e-35 151.4 113 70.8
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 7.9e-35 150.6 72 97.2
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 1.8e-34 149.4 112 70.5
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 9.7e-33 143.7 113 65.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.3e-32 143.3 79 87.3
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 6.3e-32 141.0 112 67.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 2.4e-31 139.0 71 90.1
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 5.3e-31 137.9 78 84.6
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 5.3e-31 137.9 77 81.8
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 4.5e-30 134.8 79 78.5
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 6.3e-24 114.4 85 67.1
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 2.7e-19 99.0 84 57.1
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.4e-18 96.7 71 60.6
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 2.3e-18 95.9 84 53.6
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 4.0e-18 95.1 76 61.8
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 5.2e-18 94.7 84 54.8
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 5.2e-18 94.7 84 54.8
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 6.8e-18 94.4 77 55.8
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.2e-17 93.6 69 63.8
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 1.2e-17 93.6 78 57.7
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.2e-17 93.6 84 56.0
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 1.5e-17 93.2 84 57.1
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.5e-17 93.2 67 64.2
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.5e-17 93.2 79 54.4
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 2.6e-17 92.4 78 56.4
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 2.6e-17 92.4 77 57.1
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 2.6e-17 92.4 76 57.9
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 2.6e-17 92.4 84 53.6
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 3.4e-17 92.0 77 55.8
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 4.4e-17 91.7 78 56.4
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 4.4e-17 91.7 69 62.3
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 5.7e-17 91.3 84 53.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 5.7e-17 91.3 83 51.8
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 7.5e-17 90.9 77 58.4
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 7.5e-17 90.9 77 55.8
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 7.5e-17 90.9 78 56.4
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 7.5e-17 90.9 78 56.4
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 7.5e-17 90.9 76 57.9
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 9.8e-17 90.5 75 53.3
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 9.8e-17 90.5 76 53.9
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 1.3e-16 90.1 76 53.9
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.7e-16 89.7 84 54.8
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.7e-16 89.7 84 54.8
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 2.2e-16 89.4 77 55.8
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 2.2e-16 89.4 84 52.4
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 2.2e-16 89.4 84 52.4
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 2.2e-16 89.4 84 54.8
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 2.2e-16 89.4 77 51.9
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 3.7e-16 88.6 69 58.0
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 4.8e-16 88.2 78 53.8
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 4.8e-16 88.2 84 51.2
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 6.3e-16 87.8 84 52.4
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 8.3e-16 87.4 71 54.9
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 8.3e-16 87.4 77 57.1
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.1e-15 87.0 71 59.2
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.1e-15 87.0 77 53.2
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 1.1e-15 87.0 75 57.3
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 1.4e-15 86.7 77 55.8
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.8e-15 86.3 77 53.2
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 3.1e-15 85.5 69 59.4
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 4.1e-15 85.1 84 51.2
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 5.4e-15 84.7 76 55.3
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 5.4e-15 84.7 76 55.3
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 7.0e-15 84.3 81 51.9
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 9.1e-15 84.0 67 56.7
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 9.1e-15 84.0 75 53.3
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.2e-14 83.6 77 54.5
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 1.6e-14 83.2 72 56.9
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 2.7e-14 82.4 77 50.6
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 3.5e-14 82.0 77 50.6
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 4.5e-14 81.6 69 53.6
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 4.5e-14 81.6 77 50.6
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 1.0e-13 80.5 75 54.7
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 1.0e-13 80.5 76 55.3
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.0e-13 80.5 85 47.1
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 1.7e-13 79.7 84 48.8
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.2e-13 79.3 78 53.8
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 2.9e-13 79.0 85 47.1
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 3.8e-13 78.6 75 50.7
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 3.8e-13 78.6 77 50.6
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 1.1e-12 77.0 77 49.4
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 1.1e-12 77.0 67 58.2
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 1.5e-12 76.6 86 50.0
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.5e-12 76.6 86 50.0
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.5e-12 76.6 86 50.0
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 1.5e-12 76.6 86 51.2
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 4.2e-12 75.1 72 48.6
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 5.5e-12 74.7 67 56.7
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 7.2e-12 74.3 75 49.3
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 7.2e-12 74.3 78 50.0
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.2e-11 73.6 85 48.2
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.6e-11 73.2 50 66.0
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.4e-10 70.1 78 47.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 2.3e-10 69.3 50 62.0
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 6.8e-10 67.8 85 43.5
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 2.0e-09 66.2 68 50.0
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.8e-07 59.7 43 62.8
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.2e-06 57.0 70 41.4
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 3.5e-06 55.5 43 60.5
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.7e-06 54.3 46 54.3


User provided reference genes

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