Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24612 Brassica carinata HOM05D006579 ORTHO05D007783 2.0e-131 472.6 276 100.0
C05p01100 Brassica napus HOM05D006579 ORTHO05D007783 2.0e-131 472.6 276 100.0
BolC5t28891H Brassica oleracea HOM05D006579 ORTHO05D007783 7.7e-131 470.7 276 99.6
BraA10t42384Z Brassica rapa HOM05D006579 ORTHO05D007783 2.1e-128 462.6 276 98.2
CARHR001640 Cardamine hirsuta HOM05D006579 ORTHO05D007783 2.2e-117 426.0 278 87.1
Sp1g01410 Schrenkiella parvula HOM05D006579 ORTHO05D007783 4.9e-117 424.9 277 91.7
AL1G11660 Arabidopsis lyrata HOM05D006579 ORTHO05D007783 8.3e-117 424.1 278 90.6
Thhalv10008452m.g Eutrema salsugineum HOM05D006579 ORTHO05D007783 3.1e-116 422.2 276 91.3
AT1G02330 Arabidopsis thaliana HOM05D006579 ORTHO05D007783 8.6e-114 414.1 280 89.3
Carub.0001s0137 Capsella rubella HOM05D006579 ORTHO05D007783 7.3e-113 411.0 279 83.9
Aa31LG1G10170 Aethionema arabicum HOM05D006579 ORTHO05D007783 4.4e-110 401.7 276 87.7
THA.LOC104825921 Tarenaya hassleriana HOM05D006579 ORTHO05D007783 1.4e-103 380.2 279 76.3
Gohir.D11G111000 Gossypium hirsutum HOM05D006579 ORTHO05D007783 3.7e-93 345.5 272 71.0
Potri.014G110200 Populus trichocarpa HOM05D006579 ORTHO05D007783 8.3e-93 344.4 279 70.6
Thecc.01G328000 Theobroma cacao HOM05D006579 ORTHO05D007783 8.3e-93 344.4 276 69.2
Ciclev10021552m.g Citrus clementina HOM05D006579 ORTHO05D007783 1.1e-92 344.0 249 75.1
Duzib138G1509 Durio zibethinus HOM05D006579 ORTHO05D007783 1.4e-92 343.6 276 68.8
Gorai.007G118800 Gossypium raimondii HOM05D006579 ORTHO05D007783 1.4e-92 343.6 272 70.6
Manes.14G164500 Manihot esculenta HOM05D006579 ORTHO05D007783 1.2e-91 340.5 277 75.8
COL.COLO4_23096 Corchorus olitorius HOM05D006579 ORTHO05D007783 1.6e-91 340.1 276 69.9
Gohir.A11G106100 Gossypium hirsutum HOM05D006579 ORTHO05D007783 7.8e-91 337.8 272 70.2
Nn8g39570 Nelumbo nucifera HOM05D006579 ORTHO05D007783 6.6e-90 334.7 273 69.2
arahy.Tifrunner.gnm1.ann1.3317JQ Arachis hypogaea HOM05D006579 ORTHO05D007783 1.9e-89 333.2 249 73.9
arahy.Tifrunner.gnm1.ann1.E1WP71 Arachis hypogaea HOM05D006579 ORTHO05D007783 3.3e-89 332.4 249 73.5
TAR362G0572 Trochodendron aralioides HOM05D006579 ORTHO05D007783 5.6e-89 331.6 272 73.5
TWI23G0058 Tripterygium wilfordii HOM05D006579 ORTHO05D007783 7.3e-89 331.3 277 66.4
GSVIVG01028219001 Vitis vinifera HOM05D006579 ORTHO05D007783 1.2e-88 330.5 276 71.4
Atru.chr5.832 Acer truncatum HOM05D006579 ORTHO05D007783 2.1e-88 329.7 248 73.8
PGR042G1939 Punica granatum HOM05D006579 ORTHO05D007783 4.7e-88 328.6 284 65.5
Cpa.g.sc57.48 Carica papaya HOM05D006579 ORTHO05D007783 1.1e-87 327.4 273 67.8
ATR0796G267 Amborella trichopoda HOM05D006579 ORTHO05D007783 1.4e-87 327.0 243 72.8
Lalb_Chr06g0167181 Lupinus albus HOM05D006579 ORTHO05D007783 1.4e-87 327.0 281 70.5
Dinv33186 Davidia involucrata HOM05D006579 ORTHO05D007783 1.8e-87 326.6 283 73.1
Eucgr.A00989 Eucalyptus grandis HOM05D006579 ORTHO05D007783 3.1e-87 325.9 282 66.7
MBI15_g35678_MAGBIO Magnolia biondii HOM05D006579 ORTHO05D007783 3.1e-87 325.9 245 73.5
Glyma.02G006400 Glycine max HOM05D006579 ORTHO05D007783 1.2e-86 323.9 249 72.7
Aqoxy2G02395 Aquilegia oxysepala HOM05D006579 ORTHO05D007783 2.0e-86 323.2 285 72.6
Lalb_Chr21g0309921 Lupinus albus HOM05D006579 ORTHO05D007783 4.4e-86 322.0 281 71.9
Sabra14G0081200 Salix brachista HOM05D006579 ORTHO05D007783 4.4e-86 322.0 310 62.9
VMungo0720G0607 Vigna mungo HOM05D006579 ORTHO05D007783 4.4e-86 322.0 249 71.9
DCAR_018237 Daucus carota HOM05D006579 ORTHO05D007783 5.8e-86 321.6 278 68.0
CAN.G179.22 Capsicum annuum HOM05D006579 ORTHO05D007783 7.6e-86 321.2 289 70.9
PSO761G0510 Papaver somniferum HOM05D006579 ORTHO05D007783 9.9e-86 320.9 244 72.5
Cfa004929 Carpinus fangiana HOM05D006579 ORTHO05D007783 1.7e-85 320.1 297 62.6
Nitab4.5_0001628g0050 Nicotiana tabacum HOM05D006579 ORTHO05D007783 2.2e-85 319.7 290 63.8
PSO210G5405 Papaver somniferum HOM05D006579 ORTHO05D007783 2.2e-85 319.7 244 72.5
Glyma.10G140000 Glycine max HOM05D006579 ORTHO05D007783 2.9e-85 319.3 249 71.5
QL09p037462 Quercus lobata HOM05D006579 ORTHO05D007783 2.9e-85 319.3 271 66.8
Phvul.007G207700 Phaseolus vulgaris HOM05D006579 ORTHO05D007783 3.8e-85 318.9 251 71.3
Lj5g0006855 Lotus japonicus HOM05D006579 ORTHO05D007783 8.4e-85 317.8 282 65.2
Nitab4.5_0002103g0080 Nicotiana tabacum HOM05D006579 ORTHO05D007783 8.4e-85 317.8 290 63.8
Hund07814 Selenicereus undatus HOM05D006579 ORTHO05D007783 1.9e-84 316.6 272 65.8
HPP92_026046 Vanilla planifolia HOM05D006579 ORTHO05D007783 2.4e-84 316.2 275 66.9
Solyc01g068580.4 Solanum lycopersicum HOM05D006579 ORTHO05D007783 3.2e-84 315.8 292 68.5
Sopen01g030530 Solanum pennellii HOM05D006579 ORTHO05D007783 3.2e-84 315.8 292 68.2
Ca_10226_v3 Cicer arietinum L. HOM05D006579 ORTHO05D007783 2.1e-83 313.2 282 63.5
Medtr1g085470 Medicago truncatula HOM05D006579 ORTHO05D007783 4.6e-83 312.0 284 70.4
Psat6g157680 Pisum sativum HOM05D006579 ORTHO05D007783 1.3e-82 310.5 284 63.7
ClCG01G007260 Citrullus lanatus HOM05D006579 ORTHO05D007783 2.3e-82 309.7 303 61.1
TPR.G3075 Trifolium pratense HOM05D006579 ORTHO05D007783 2.3e-82 309.7 286 68.9
EL10Ac9g20927 Beta vulgaris HOM05D006579 ORTHO05D007783 3.0e-82 309.3 272 64.3
Cc06_g22680 Coffea canephora HOM05D006579 ORTHO05D007783 3.0e-82 309.3 282 62.1
MD17G1285900 Malus domestica HOM05D006579 ORTHO05D007783 3.0e-82 309.3 313 60.1
MELO3C005183.2 Cucumis melo HOM05D006579 ORTHO05D007783 6.6e-82 308.1 270 64.4
HanXRQChr01g0017841 Helianthus annuus HOM05D006579 ORTHO05D007783 8.7e-82 307.8 263 66.2
CANSAT25G2874 Cannabis sativa HOM05D006579 ORTHO05D007783 1.5e-81 307.0 296 61.1
CiPaw.07G127500 Carya illinoinensis HOM05D006579 ORTHO05D007783 1.5e-81 307.0 267 65.5
SalBow3G0048 Salvia bowleyana HOM05D006579 ORTHO05D007783 1.2e-80 303.9 252 67.1
CsaV3_5G018690 Cucumis sativus L. HOM05D006579 ORTHO05D007783 2.1e-80 303.1 303 60.4
Oeu038082.1 Olea europaea HOM05D006579 ORTHO05D007783 2.8e-80 302.8 258 66.3
Prupe.3G000500 Prunus persica HOM05D006579 ORTHO05D007783 2.8e-80 302.8 310 61.9
ECA248G0873 Erigeron canadensis HOM05D006579 ORTHO05D007783 1.1e-79 300.8 290 60.0
FAN28G1483 Fragaria x ananassa HOM05D006579 ORTHO05D007783 2.0e-78 296.6 248 67.7
FvH4_1g26040 Fragaria vesca HOM05D006579 ORTHO05D007783 3.4e-78 295.8 248 67.3
FAN19G0998 Fragaria x ananassa HOM05D006579 ORTHO05D007783 3.4e-78 295.8 248 67.3
RcHm_v2.0_Chr3g0485501 Rosa chinensis HOM05D006579 ORTHO05D007783 5.8e-78 295.0 273 62.6
PGSC0003DMG400000840 Solanum tuberosum HOM05D006579 ORTHO05D007783 9.9e-78 294.3 328 60.1
AUR62037602 Chenopodium quinoa HOM05D006579 ORTHO05D007783 1.3e-77 293.9 272 62.5
Sed0009510 Sechium edule HOM05D006579 ORTHO05D007783 1.3e-77 293.9 295 61.0
CSS0004948 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 4.9e-77 292.0 210 73.3
Lsat_1_v5_gn_1_78561 Lactuca sativa HOM05D006579 ORTHO05D007783 1.9e-76 290.0 245 65.7
Sc12g0008270 Simmondsia chinensis HOM05D006579 ORTHO05D007783 4.2e-76 288.9 243 66.3
FAN23G1885 Fragaria x ananassa HOM05D006579 ORTHO05D007783 5.4e-76 288.5 252 66.3
FAN23G2819 Fragaria x ananassa HOM05D006579 ORTHO05D007783 5.4e-76 288.5 252 66.3
FAN26G1368 Fragaria x ananassa HOM05D006579 ORTHO05D007783 6.6e-74 281.6 277 60.6
Pp3c6_17910 Physcomitrium patens HOM05D006579 ORTHO05D007783 6.6e-74 281.6 245 66.5
Peaxi162Scf00309g00059 Petunia axillaris HOM05D006579 ORTHO05D007783 1.5e-73 280.4 211 71.6
Os03g0374100 Oryza sativa ssp. japonica HOM05D006579 ORTHO05D007783 1.9e-73 280.0 286 58.0
Migut.D00005 Erythranthe guttata HOM05D006579 ORTHO05D007783 8.1e-72 274.6 289 59.5
Zm00001eb018120 Zea mays HOM05D006579 ORTHO05D007783 1.5e-70 270.4 279 58.8
Mapoly0012s0210 Marchantia polymorpha HOM05D006579 ORTHO05D007783 7.6e-70 268.1 252 64.3
MSTRG.18055 Avicennia marina HOM05D006579 ORTHO05D007783 4.9e-69 265.4 250 60.8
Hma1.2p1_1372F.1_g278650 Hydrangea macrophylla HOM05D006579 ORTHO05D007783 1.4e-68 263.8 183 75.4
AagrBONN_evm.TU.Sc2ySwM_117.1030 Anthoceros agrestis HOM05D006579 ORTHO05D007783 4.2e-68 262.3 249 64.3
SGA_v2.0_scaffold417G51243 Striga asiatica HOM05D006579 ORTHO05D007783 5.4e-68 261.9 309 52.8
Pp3c5_5390 Physcomitrium patens HOM05D006579 ORTHO05D007783 3.5e-67 259.2 247 63.2
Actinidia21333 Actinidia chinensis HOM05D006579 ORTHO05D007783 4.3e-65 252.3 257 57.6
CSS0018503 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 2.6e-62 243.0 176 73.3
Rhsim01G0001200 Rhododendron simsii HOM05D006579 ORTHO05D007783 7.6e-62 241.5 176 72.7
Ah.01g015750 Amaranthus hybridus HOM05D006579 ORTHO05D007783 3.8e-61 239.2 397 42.6
SHI19775 Sapria himalayana HOM05D006579 ORTHO05D007783 4.9e-61 238.8 246 58.9
unitig_747.g21528 Utricularia gibba HOM05D006579 ORTHO05D007783 5.3e-55 218.8 258 53.1
CBR_g3462 Chara braunii HOM05D006579 ORTHO05D007783 3.5e-51 206.1 187 59.4
vmacro02350 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 2.0e-46 190.3 136 74.3
Lju2566A1G36 Lonicera japonica HOM05D006579 ORTHO05D007783 1.4e-44 184.1 141 72.3
HPP92_013492 Vanilla planifolia HOM05D006579 ORTHO05D007783 2.5e-41 173.3 165 62.4
HanXRQChr09g0263751 Helianthus annuus HOM05D006579 ORTHO05D007783 2.2e-40 170.2 181 58.0
SEGI_25815 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 3.2e-36 156.4 130 66.9
SMO367G0899 Selaginella moellendorffii HOM05D006579 ORTHO05D007783 3.6e-35 152.9 134 67.2
AUR62039016 Chenopodium quinoa HOM05D006579 ORTHO05D007783 7.0e-31 138.7 137 59.9
Haze_05169 Corylus avellana HOM05D006579 ORTHO05D007783 4.2e-28 129.4 163 49.7
Cc00_g21250 Coffea canephora HOM05D006579 ORTHO05D007783 1.2e-27 127.9 77 83.1
SEGI_10424 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 3.7e-24 116.3 116 61.2
COL.COLO4_00282 Corchorus olitorius HOM05D006579 ORTHO05D007783 8.0e-19 98.6 100 59.0
BcaB03g13515 Brassica carinata HOM05D006579 ORTHO05D007783 2.6e-17 93.6 72 72.2
MCO04G420 Micromonas commoda HOM05D006579 ORTHO05D007783 2.4e-15 87.0 124 44.4
Rhsim01G0001100 Rhododendron simsii HOM05D006579 ORTHO05D007783 1.3e-13 81.3 110 46.4
vmacro02349 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 1.1e-12 78.2 77 58.4
Lju2566A1T41 Lonicera japonica HOM05D006579 ORTHO05D007783 6.3e-08 62.4 42 71.4
Cre10.g423350 Chlamydomonas reinhardtii HOM05D006579 ORTHO05D007783 4.1e-07 59.7 159 34.0


User provided reference genes

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