Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24573 Brassica carinata HOM05D000147 ORTHO05D014960 3.9e-85 318.2 170 100.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.9e-85 318.2 170 100.0
BolC5t28934H Brassica oleracea HOM05D000147 ORTHO05D001254 3.9e-85 318.2 170 100.0
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.6e-81 306.2 170 94.7
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.8e-80 301.6 170 93.5
BcaC05g24630 Brassica carinata HOM05D000147 ORTHO05D001254 3.5e-73 278.5 141 100.0
Sp1g01890 Schrenkiella parvula HOM05D000147 ORTHO05D001254 9.8e-52 207.2 179 72.1
BcaB03g15754 Brassica carinata HOM05D000147 ORTHO05D014960 1.9e-47 193.0 180 68.3
Sp6g02380 Schrenkiella parvula HOM05D000147 ORTHO05D001254 1.8e-45 186.4 197 61.4
AL1G12330 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 2.0e-44 183.0 179 65.4
Thhalv10028366m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 1.3e-43 180.3 197 59.9
AT4G02480 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 1.9e-42 176.4 198 57.6
CARHR250770 Cardamine hirsuta HOM05D000147 ORTHO05D001254 2.4e-42 176.0 196 57.1
Thhalv10006579m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 5.4e-42 174.9 186 64.0
AL6G50580 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 2.0e-41 172.9 199 56.3
Carub.0006s3466 Capsella rubella HOM05D000147 ORTHO05D001254 4.6e-41 171.8 198 57.6
BcaC01g06754 Brassica carinata HOM05D000147 ORTHO05D001254 8.6e-40 167.5 197 60.9
C03p37830 Brassica napus HOM05D000147 ORTHO05D001254 8.6e-40 167.5 197 60.9
BolC3t16072H Brassica oleracea HOM05D000147 ORTHO05D001254 8.6e-40 167.5 197 60.9
BraA09t35843Z Brassica rapa HOM05D000147 ORTHO05D001254 5.6e-39 164.9 204 56.4
A03p31040 Brassica napus HOM05D000147 ORTHO05D001254 7.3e-39 164.5 197 59.9
BraA03t12281Z Brassica rapa HOM05D000147 ORTHO05D001254 7.3e-39 164.5 197 59.9
CARHR002240 Cardamine hirsuta HOM05D000147 ORTHO05D001254 2.1e-38 162.9 180 60.0
Aa31LG5G2110 Aethionema arabicum HOM05D000147 ORTHO05D001254 1.1e-37 160.6 201 54.2
BcaNung04060 Brassica carinata HOM05D000147 ORTHO05D001254 8.9e-37 157.5 154 61.7
C09p02020 Brassica napus HOM05D000147 ORTHO05D001254 1.2e-36 157.1 204 57.4
BcaNung04057 Brassica carinata HOM05D000147 ORTHO05D001254 3.4e-36 155.6 204 56.9
BolC9t53132H Brassica oleracea HOM05D000147 ORTHO05D001254 5.8e-36 154.8 204 56.9
BcaC07g42297 Brassica carinata HOM05D000147 ORTHO05D001254 9.2e-34 147.5 179 59.8
BcaB01g02037 Brassica carinata HOM05D000147 ORTHO05D001254 2.1e-33 146.4 201 54.2
AT1G02890 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 2.7e-33 146.0 178 54.5
A09p01930 Brassica napus HOM05D000147 ORTHO05D001254 2.7e-33 146.0 202 54.0
A02p24760 Brassica napus HOM05D000147 ORTHO05D001254 5.6e-31 138.3 177 53.1
BcaB01g02461 Brassica carinata HOM05D000147 ORTHO05D001254 4.7e-30 135.2 194 53.1
BraA02t07462Z Brassica rapa HOM05D000147 ORTHO05D001254 4.7e-30 135.2 181 55.2
THA.LOC104815931 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 4.7e-30 135.2 195 50.3
THA.LOC104801270 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 1.8e-29 133.3 197 47.2
THA.LOC104825975 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 4.4e-28 128.6 184 49.5
BcaC03g16129 Brassica carinata HOM05D000147 ORTHO05D001254 9.9e-28 127.5 177 54.8
BolC2t09916H Brassica oleracea HOM05D000147 ORTHO05D001254 1.1e-26 124.0 198 50.0
C04p20830 Brassica napus HOM05D010985 ORTHO05D014960 2.3e-24 116.3 89 64.0
BolC4t23613H Brassica oleracea HOM05D010985 ORTHO05D014960 8.6e-24 114.4 89 62.9
BolC3t20672H Brassica oleracea HOM05D010985 ORTHO05D014960 1.5e-23 113.6 89 62.9
A09p68470 Brassica napus HOM05D000147 ORTHO05D001254 2.8e-22 109.4 180 46.7
BraA09t42190Z Brassica rapa HOM05D000147 ORTHO05D001254 8.1e-22 107.8 174 45.4
C08p34900 Brassica napus HOM05D010985 ORTHO05D014960 1.1e-21 107.5 89 60.7
BcaB04g19764 Brassica carinata HOM05D000147 ORTHO05D014960 4.4e-20 102.1 168 48.8
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 2.4e-18 96.3 190 37.9
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 2.4e-18 96.3 190 37.9
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 5.4e-18 95.1 190 38.9
COL.COLO4_23369 Corchorus olitorius HOM05D000147 ORTHO05D001254 2.1e-17 93.2 192 37.0
Duzib211G0232 Durio zibethinus HOM05D000147 ORTHO05D001254 3.9e-16 89.0 194 37.1
Dinv33035 Davidia involucrata HOM05D000147 ORTHO05D001254 5.6e-15 85.1 188 39.9
QL12p027230 Quercus lobata HOM05D000147 ORTHO05D001254 5.6e-15 85.1 196 39.8
CAN.G1209.29 Capsicum annuum HOM05D000147 ORTHO05D001254 7.3e-15 84.7 183 38.8
Gohir.A12G131700 Gossypium hirsutum HOM05D000147 ORTHO05D001254 7.3e-15 84.7 183 36.6
Ciclev10018538m.g Citrus clementina HOM05D000147 ORTHO05D001254 9.6e-15 84.3 188 41.0
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 2.1e-14 83.2 190 37.9
Hund18134 Selenicereus undatus HOM05D000147 ORTHO05D001254 4.8e-14 82.0 171 37.4
Dinv19709 Davidia involucrata HOM05D000147 ORTHO05D001254 1.1e-13 80.9 189 38.1
Gohir.D12G135433 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.4e-13 80.5 184 36.4
Gorai.008G146500 Gossypium raimondii HOM05D000147 ORTHO05D001254 1.4e-13 80.5 184 36.4
Nitab4.5_0000619g0180 Nicotiana tabacum HOM05D000147 ORTHO05D001254 4.0e-13 79.0 180 37.8
AUR62008660 Chenopodium quinoa HOM05D000147 ORTHO05D001254 6.9e-13 78.2 179 34.6
PGR119G0716 Punica granatum HOM05D000147 ORTHO05D001254 9.0e-13 77.8 180 36.1
Rhsim01G0284000 Rhododendron simsii HOM05D000147 ORTHO05D001254 1.2e-12 77.4 179 38.0
BcaC02g11070 Brassica carinata HOM05D010985 ORTHO05D014960 1.5e-12 77.0 68 58.8
TAR362G0636 Trochodendron aralioides HOM05D000147 ORTHO05D001254 1.5e-12 77.0 196 35.7
Atru.chr5.1173 Acer truncatum HOM05D000147 ORTHO05D001254 2.0e-12 76.6 187 35.8
TWI14G0377 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 2.0e-12 76.6 180 37.8
TWI59G0815 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 2.0e-12 76.6 193 39.4
TAR633G1845 Trochodendron aralioides HOM05D000147 ORTHO05D001254 2.0e-12 76.6 193 36.3
Solyc06g084530.3 Solanum lycopersicum HOM05D000147 ORTHO05D001254 3.4e-12 75.9 185 38.4
Sopen06g035910 Solanum pennellii HOM05D000147 ORTHO05D001254 3.4e-12 75.9 185 38.4
Lalb_Chr06g0163411 Lupinus albus HOM05D000147 ORTHO05D001254 9.9e-12 74.3 191 37.7
Nitab4.5_0002469g0030 Nicotiana tabacum HOM05D000147 ORTHO05D001254 9.9e-12 74.3 180 36.7
Cpa.g.sc9.217 Carica papaya HOM05D000147 ORTHO05D001254 1.3e-11 73.9 192 33.9
ClCG09G005990 Citrullus lanatus HOM05D000147 ORTHO05D001254 1.3e-11 73.9 196 34.7
Lsat_1_v5_gn_9_921 Lactuca sativa HOM05D000147 ORTHO05D001254 2.2e-11 73.2 192 35.4
Sopen09g029770 Solanum pennellii HOM05D000147 ORTHO05D001254 2.2e-11 73.2 192 35.9
MELO3C016015.2 Cucumis melo HOM05D000147 ORTHO05D001254 2.9e-11 72.8 197 35.0
Nn4g25832 Nelumbo nucifera HOM05D000147 ORTHO05D001254 2.9e-11 72.8 186 33.9
Sed0027983 Sechium edule HOM05D000147 ORTHO05D001254 2.9e-11 72.8 194 34.5
CsaV3_7G029130 Cucumis sativus L. HOM05D000147 ORTHO05D001254 4.9e-11 72.0 196 34.2
Sed0001662 Sechium edule HOM05D000147 ORTHO05D001254 1.9e-10 70.1 190 37.9
Sc05g0004160 Simmondsia chinensis HOM05D000147 ORTHO05D001254 1.9e-10 70.1 175 33.7
CSS0010073 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D001254 2.4e-10 69.7 179 34.6
Lj5g0023933 Lotus japonicus HOM05D000147 ORTHO05D001254 2.4e-10 69.7 191 39.3
EL10Ac7g17476 Beta vulgaris HOM05D000147 ORTHO05D001254 3.2e-10 69.3 175 33.1
Cfa005940 Carpinus fangiana HOM05D000147 ORTHO05D001254 3.2e-10 69.3 187 36.9
CiPaw.07G106800 Carya illinoinensis HOM05D000147 ORTHO05D001254 3.2e-10 69.3 188 38.8
Nn4g21994 Nelumbo nucifera HOM05D000147 ORTHO05D001254 4.2e-10 68.9 189 29.1
Nn4g22355 Nelumbo nucifera HOM05D000147 ORTHO05D001254 4.2e-10 68.9 189 29.1
Migut.N01500 Erythranthe guttata HOM05D000147 ORTHO05D001254 5.4e-10 68.6 171 34.5
HanXRQChr15g0465741 Helianthus annuus HOM05D000147 ORTHO05D001254 7.1e-10 68.2 193 33.2
Solyc09g074950.3 Solanum lycopersicum HOM05D000147 ORTHO05D001254 7.1e-10 68.2 183 35.5
Lalb_Chr02g0143221 Lupinus albus HOM05D000147 ORTHO05D001254 1.2e-09 67.4 186 34.4
Nn3g21450 Nelumbo nucifera HOM05D000147 ORTHO05D001254 1.2e-09 67.4 191 32.5
SGA_v2.0_scaffold36G14347 Striga asiatica HOM05D000147 ORTHO05D001254 1.2e-09 67.4 179 34.1
DCAR_012389 Daucus carota HOM05D000147 ORTHO05D001254 1.6e-09 67.0 181 37.0
PSO170G5647 Papaver somniferum HOM05D000147 ORTHO05D001254 1.6e-09 67.0 193 33.7
CANSAT25G0997 Cannabis sativa HOM05D000147 ORTHO05D001254 2.7e-09 66.2 191 37.2
Gohir.A08G101000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 2.7e-09 66.2 158 34.8
Gorai.004G089000 Gossypium raimondii HOM05D000147 ORTHO05D001254 2.7e-09 66.2 158 35.4
Ca_10350_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 3.5e-09 65.9 180 35.0
DCAR_005802 Daucus carota HOM05D000147 ORTHO05D001254 4.6e-09 65.5 178 33.1
Psat6g165720 Pisum sativum HOM05D000147 ORTHO05D001254 4.6e-09 65.5 188 35.1
Cc01_g20700 Coffea canephora HOM05D000147 ORTHO05D001254 6.0e-09 65.1 184 34.8
ECA247G1106 Erigeron canadensis HOM05D000147 ORTHO05D001254 7.9e-09 64.7 192 34.9
Gohir.D08G084600 Gossypium hirsutum HOM05D000147 ORTHO05D001254 7.9e-09 64.7 158 35.4
Manes.01G217300 Manihot esculenta HOM05D000147 ORTHO05D001254 1.0e-08 64.3 193 34.7
Actinidia24832 Actinidia chinensis HOM05D000147 ORTHO05D001254 2.3e-08 63.2 158 37.3
Lalb_Chr18g0047091 Lupinus albus HOM05D000147 ORTHO05D001254 2.3e-08 63.2 58 50.0
Mapoly0024s0066 Marchantia polymorpha HOM05D000147 ORTHO05D001254 2.3e-08 63.2 176 33.0
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 3.0e-08 62.8 53 50.9
AL1G56440 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 3.9e-08 62.4 52 59.6
Glyma.10G019400 Glycine max HOM05D000147 ORTHO05D001254 3.9e-08 62.4 181 35.9
GSVIVG01027983001 Vitis vinifera HOM05D000147 ORTHO05D001254 3.9e-08 62.4 191 33.0
Medtr1g088730 Medicago truncatula HOM05D000147 ORTHO05D001254 6.7e-08 61.6 176 33.0
BcaB07g33235 Brassica carinata HOM05D000147 ORTHO05D094792 8.7e-08 61.2 33 78.8
Medtr1g088750 Medicago truncatula HOM05D000147 ORTHO05D001254 8.7e-08 61.2 185 34.6
TPR.G34000 Trifolium pratense HOM05D000147 ORTHO05D001254 8.7e-08 61.2 190 35.3
Ca_10351_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 1.5e-07 60.5 191 37.2
TAR374G0574 Trochodendron aralioides HOM05D000147 ORTHO05D001254 1.5e-07 60.5 189 30.2
Glyma.10G019300 Glycine max HOM05D000147 ORTHO05D001254 2.5e-07 59.7 194 35.6
TAR622G1241 Trochodendron aralioides HOM05D000147 ORTHO05D001254 3.3e-07 59.3 191 30.4
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 4.3e-07 58.9 151 29.1
PSO210G7088 Papaver somniferum HOM05D000147 ORTHO05D001254 4.3e-07 58.9 185 33.0
Potri.014G131000 Populus trichocarpa HOM05D000147 ORTHO05D001254 4.3e-07 58.9 121 35.5
Peaxi162Scf00001g04919 Petunia axillaris HOM05D000147 ORTHO05D001254 7.4e-07 58.2 124 36.3
Sabra14G0097500 Salix brachista HOM05D000147 ORTHO05D001254 7.4e-07 58.2 133 33.1
SEGI_02336 Sequoiadendron giganteum HOM05D000147 ORTHO05D001254 7.4e-07 58.2 94 37.2
CAN.G339.25 Capsicum annuum HOM05D000147 ORTHO05D001254 9.6e-07 57.8 181 32.0
Zm00001eb115830 Zea mays HOM05D000147 ORTHO05D001254 9.6e-07 57.8 172 36.6
GSVIVG01008524001 Vitis vinifera HOM05D000147 ORTHO05D001254 1.3e-06 57.4 187 31.0
Aqoxy2G02977 Aquilegia oxysepala HOM05D000147 ORTHO05D001254 1.6e-06 57.0 189 29.1
RcHm_v2.0_Chr6g0293701 Rosa chinensis HOM05D000147 ORTHO05D001254 3.7e-06 55.8 178 32.0
Phvul.007G106400 Phaseolus vulgaris HOM05D000147 ORTHO05D001254 4.8e-06 55.5 134 34.3
VMungo0720G1422 Vigna mungo HOM05D000147 ORTHO05D001254 4.8e-06 55.5 140 34.3
Glyma.02G155100 Glycine max HOM05D000147 ORTHO05D001254 8.1e-06 54.7 153 34.0


User provided reference genes

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