Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.6e-123 445.7 266 100.0
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.3e-102 375.6 263 81.0
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.5e-102 374.0 263 80.6
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.0e-100 370.5 266 81.6
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 4.9e-98 361.7 266 82.0
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.2e-97 359.0 262 76.0
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 5.0e-95 351.7 262 75.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 4.3e-94 348.6 265 79.6
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 6.8e-92 341.3 262 74.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 8.9e-92 340.9 265 78.1
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.7e-90 336.7 263 72.6
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.3e-84 316.2 265 74.3
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.9e-82 309.3 266 67.7
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 3.2e-81 305.8 266 66.9
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 2.7e-80 302.8 266 65.8
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 6.0e-80 301.6 266 65.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 6.0e-80 301.6 266 65.4
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 6.6e-79 298.1 268 66.0
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.1e-78 297.4 268 66.0
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.1e-77 293.1 266 65.4
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 6.2e-77 291.6 266 65.4
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.0e-76 288.9 266 63.9
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.3e-74 283.9 266 61.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.6e-69 265.8 236 67.4
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.6e-69 265.8 267 59.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 3.6e-69 265.8 272 58.1
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.4e-68 263.8 266 59.4
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.8e-68 263.5 269 58.4
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 4.0e-68 262.3 275 59.3
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.2e-67 260.8 269 57.2
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.8e-67 258.5 267 57.7
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 1.3e-66 257.3 278 57.6
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.9e-66 256.1 267 57.3
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-65 253.8 267 57.7
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.2e-65 252.7 266 59.4
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.4e-65 251.9 264 55.3
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 5.4e-65 251.9 267 55.8
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.1e-65 251.5 232 62.5
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 9.3e-65 251.1 276 56.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.6e-64 250.4 276 56.2
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.6e-64 250.4 271 56.1
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 6.0e-64 248.4 266 55.3
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 7.8e-64 248.1 265 55.5
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.0e-63 247.7 276 55.4
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.3e-63 247.3 285 52.6
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.3e-63 246.5 285 54.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.3e-63 246.5 286 53.8
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.3e-63 246.5 264 56.4
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 3.0e-63 246.1 276 54.3
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 5.1e-63 245.4 273 53.8
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.6e-63 245.0 272 55.1
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 8.7e-63 244.6 286 52.8
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.7e-63 244.6 276 54.0
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 1.5e-62 243.8 273 55.7
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.5e-62 243.8 274 54.0
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.9e-62 243.4 272 55.9
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.5e-62 243.0 268 54.5
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.3e-62 242.7 275 54.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 5.6e-62 241.9 277 55.6
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 7.3e-62 241.5 226 61.5
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 7.3e-62 241.5 265 55.5
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.3e-61 240.7 276 54.3
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.6e-61 240.4 280 52.1
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.8e-61 239.6 272 54.8
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.6e-61 239.2 267 53.9
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 3.6e-61 239.2 266 54.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 6.2e-61 238.4 266 53.4
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.4e-60 237.3 266 54.5
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.0e-60 235.7 268 51.5
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-60 235.7 273 53.1
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 5.3e-60 235.3 262 51.5
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 9.0e-60 234.6 266 53.8
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.2e-59 234.2 194 66.5
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.0e-59 233.4 265 53.6
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 3.4e-59 232.6 214 61.7
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.5e-59 232.3 267 54.3
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 4.5e-59 232.3 267 54.3
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 4.5e-59 232.3 194 66.0
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 7.6e-59 231.5 271 53.9
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-58 230.7 276 52.2
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-58 230.7 271 53.5
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-58 230.7 271 53.5
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.9e-58 229.6 268 54.5
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 3.8e-58 229.2 265 52.1
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 4.9e-58 228.8 304 52.6
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.4e-57 227.3 269 52.0
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.4e-57 226.5 301 52.2
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.4e-57 226.5 305 49.2
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 7.1e-57 224.9 267 52.4
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 9.3e-57 224.6 286 49.0
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.6e-56 223.8 266 52.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 2.1e-56 223.4 267 51.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.7e-56 223.0 222 59.0
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 3.5e-56 222.6 210 61.0
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 4.6e-56 222.2 268 51.9
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.8e-55 220.3 269 50.6
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.0e-55 219.5 285 49.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.9e-55 219.2 232 56.9
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 3.9e-55 219.2 306 46.4
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 5.1e-55 218.8 270 50.4
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 3.3e-54 216.1 192 63.5
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 4.3e-54 215.7 218 57.3
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.3e-54 215.7 277 50.2
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.6e-53 213.8 278 46.8
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.8e-53 212.2 263 49.0
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.4e-52 209.9 191 61.3
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.5e-51 207.2 194 60.3
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.6e-51 206.5 270 47.8
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 5.8e-51 205.3 289 49.5
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 5.8e-51 205.3 296 47.3
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 7.6e-51 204.9 214 59.3
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 9.9e-51 204.5 190 61.1
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.3e-50 204.1 294 47.3
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.1e-49 201.1 278 47.5
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 4.2e-49 199.1 224 57.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 7.1e-49 198.4 224 57.6
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 9.3e-49 198.0 304 45.7
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.6e-48 195.7 221 56.6
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 5.1e-47 192.2 222 52.3
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 5.1e-47 192.2 274 46.7
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.3e-46 189.5 222 51.8
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.6e-45 187.2 194 57.2
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.4e-44 183.3 268 46.3
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 4.0e-44 182.6 226 51.3
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 5.3e-44 182.2 280 43.9
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.0e-43 180.3 263 46.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 3.4e-43 179.5 260 45.8
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.5e-42 175.3 167 59.9
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 8.4e-42 174.9 235 50.2
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.5e-40 169.5 192 50.5
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 7.4e-38 161.8 193 46.1
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.3e-37 161.0 192 50.5
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.6e-37 160.6 245 47.3
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.2e-37 160.2 152 61.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.0e-34 151.4 118 78.8
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.0e-34 151.4 192 44.8
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.9e-34 149.8 217 42.9
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 3.8e-34 149.4 194 49.0
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.8e-34 149.4 152 57.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 3.2e-33 146.4 198 45.5
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 3.9e-31 139.4 228 39.0
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.7e-29 134.0 190 45.3
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 5.3e-28 129.0 170 42.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 6.5e-26 122.1 91 76.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.5e-25 120.2 227 40.1
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 3.2e-25 119.8 149 48.3
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 7.2e-25 118.6 264 33.3
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.1e-24 117.1 175 48.0
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 4.7e-24 115.9 101 66.3
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 3.0e-23 113.2 91 65.9
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.7e-21 107.5 89 60.7
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.5e-19 100.9 57 91.2
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-19 100.9 167 42.5
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 3.4e-19 99.8 82 67.1
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.8e-18 96.3 171 43.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.1e-16 89.0 218 36.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.3e-15 87.0 189 35.4
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 3.0e-15 86.7 98 53.1
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 3.9e-15 86.3 175 38.9
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 8.8e-15 85.1 189 36.0
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.7e-13 79.7 76 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.8e-12 77.4 149 37.6
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.1e-12 76.6 152 39.5
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 9.4e-09 65.1 97 43.3
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.2e-06 58.2 83 51.8
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 1.5e-06 57.8 151 38.4
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 2.0e-06 57.4 182 26.4
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 9.7e-06 55.1 100 45.0


User provided reference genes

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