Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1330.9 632 100.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1300.8 643 96.9
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1300.0 643 96.7
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1293.9 670 93.3
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1287.3 670 92.7
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1273.1 642 92.4
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1273.1 642 92.4
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1267.3 642 92.2
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1263.8 642 91.7
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1263.8 642 91.7
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1249.2 614 94.3
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1247.3 642 91.6
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1236.9 642 91.1
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1232.6 642 90.7
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1231.1 642 90.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 0.0e+00 1198.3 643 87.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1147.1 661 80.6
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 0.0e+00 1115.1 549 94.9
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1083.2 595 81.2
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 596 81.2
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1081.2 596 81.5
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1079.3 596 80.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1077.8 595 81.3
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.2e-311 1071.6 609 79.1
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 3.0e-311 1071.2 595 80.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 5.2e-311 1070.5 595 80.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 8.6e-311 1069.7 594 79.1
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 3.6e-309 1064.3 595 80.2
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 6.2e-309 1063.5 595 80.2
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 1.1e-308 1062.8 595 79.8
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.4e-308 1062.4 595 80.3
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 3.1e-308 1061.2 621 76.5
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 8.9e-308 1059.7 595 79.5
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.2e-307 1059.3 595 79.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 4.4e-307 1057.4 595 79.0
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 4.4e-307 1057.4 595 79.3
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 4.4e-307 1057.4 595 78.3
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 9.8e-307 1056.2 595 79.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.7e-306 1055.4 595 79.7
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 2.2e-306 1055.0 595 78.2
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 2.9e-306 1054.7 600 78.7
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 4.9e-306 1053.9 595 79.2
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 8.3e-306 1053.1 595 79.3
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 1.1e-305 1052.7 594 78.3
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.1e-305 1052.7 595 79.2
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.9e-305 1052.0 595 78.7
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.9e-305 1052.0 595 78.8
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 2.4e-305 1051.6 595 80.3
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 3.2e-305 1051.2 595 78.8
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 3.2e-305 1051.2 596 79.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 3.2e-305 1051.2 597 78.7
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 4.1e-305 1050.8 595 78.8
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 9.2e-305 1049.7 595 80.2
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.7e-303 1045.4 595 78.5
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 5.1e-303 1043.9 595 78.8
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 6.6e-303 1043.5 595 77.1
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 4.3e-302 1040.8 595 78.2
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 4.7e-301 1037.3 596 78.4
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.4e-300 1035.8 595 78.2
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 4.0e-300 1034.2 595 77.5
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.5e-299 1032.3 595 78.0
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 5.8e-299 1030.4 595 77.1
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 2.2e-298 1028.5 595 78.0
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 5.4e-297 1023.8 595 77.0
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.2e-296 1022.7 595 77.3
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.2e-296 1022.7 595 76.8
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 1.7e-295 1018.8 571 80.6
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 1.1e-294 1016.1 595 75.8
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.6e-293 1012.3 568 79.8
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.6e-293 1012.3 735 64.8
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 2.8e-293 1011.5 568 79.4
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.8e-293 1011.5 595 76.8
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.4e-292 1009.2 568 80.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 4.4e-291 1004.2 595 75.1
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.3e-287 992.6 595 75.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.0e-287 991.5 704 66.3
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 5.1e-287 990.7 595 74.8
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 4.3e-286 987.6 595 75.5
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 5.3e-284 980.7 645 70.1
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 4.5e-283 977.6 807 58.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 4.2e-281 971.1 596 75.0
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.4e-275 951.4 632 69.5
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.2e-274 948.7 557 76.8
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.9e-273 945.7 632 69.1
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.1e-270 936.4 558 75.1
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 4.3e-270 934.5 595 72.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 4.2e-265 917.9 505 81.0
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 6.0e-264 914.1 546 75.8
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.0e-258 896.7 504 80.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 8.7e-255 883.6 504 79.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.3e-253 879.8 541 73.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 8.2e-253 877.1 595 68.2
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 5.3e-252 874.4 580 70.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 6.9e-252 874.0 554 71.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.3e-250 869.8 532 74.4
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.0e-247 860.1 605 66.4
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 3.3e-246 855.1 572 68.5
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 5.5e-241 837.8 573 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.6e-238 828.9 598 62.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.7e-237 826.2 602 63.0
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.7e-227 792.3 595 60.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.8e-226 788.5 573 65.4
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.4e-223 780.0 596 59.9
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.2e-219 766.9 492 70.3
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 7.0e-212 741.1 557 61.6
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.5e-201 706.1 412 78.2
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.2e-190 670.6 402 74.9
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 5.1e-178 628.6 448 65.6
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.0e-174 616.7 382 73.8
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.8e-167 593.6 342 77.5
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 2.9e-165 586.3 405 67.4
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 9.4e-124 448.4 246 81.3
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.1e-121 441.4 463 50.1
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 3.1e-111 406.8 222 82.9
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 4.9e-88 329.7 202 75.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.3e-77 295.0 188 69.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.3e-72 278.5 178 71.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 4.9e-72 276.6 132 90.2
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.4e-58 231.9 122 85.2
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 4.0e-58 230.3 130 78.5
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 9.6e-52 209.1 340 37.1
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.6e-49 201.1 122 72.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.7e-48 198.4 161 55.3
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 1.5e-44 185.3 108 78.7
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 2.2e-40 171.4 83 88.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.7e-38 164.5 121 60.3
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.6e-36 156.0 115 71.3
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.1e-28 132.5 87 70.1
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.9e-28 131.7 72 81.9
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 2.2e-27 128.3 208 35.6
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.9e-26 123.2 148 45.9
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.6e-25 121.3 87 65.5
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.6e-25 121.3 87 65.5
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.5e-24 116.7 94 67.0
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.8e-21 108.6 222 29.7
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 8.8e-21 106.3 51 84.3
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.7e-19 102.1 202 29.2
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.8e-18 98.6 138 42.8
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 5.3e-18 97.1 205 27.3
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.1e-18 96.3 78 56.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-17 95.9 55 72.7
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-17 95.9 55 72.7
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.8e-16 90.9 55 69.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-14 85.5 79 53.2
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 2.7e-14 84.7 79 55.7
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 3.6e-14 84.3 79 53.2
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-13 82.0 50 70.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-13 82.0 50 70.0
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 9.1e-10 69.7 35 80.0
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 3.8e-08 64.3 34 64.7
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 1.9e-07 62.0 226 26.5
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 2.5e-07 61.6 215 25.1
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 3.2e-07 61.2 261 25.7
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 5.5e-07 60.5 220 26.4
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 1.2e-06 59.3 220 24.5
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.7e-06 58.2 258 24.8
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 6.1e-06 57.0 218 25.7
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 8.0e-06 56.6 143 30.1


User provided reference genes

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