Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24422 Brassica carinata HOM05D001850 ORTHO05D039892 4.8e-76 287.7 144 100.0
C05p03340 Brassica napus HOM05D001850 ORTHO05D039892 2.7e-42 175.6 88 100.0
BcaB02g06872 Brassica carinata HOM05D001850 ORTHO05D012467 2.5e-32 142.5 91 84.6
A10p03870 Brassica napus HOM05D001850 ORTHO05D041579 3.6e-23 112.1 92 67.4
BraA10t42661Z Brassica rapa HOM05D001850 ORTHO05D041579 3.6e-23 112.1 92 67.4
A05p01510 Brassica napus HOM05D001850 ORTHO05D012467 1.9e-19 99.8 101 59.4
BraA05t19147Z Brassica rapa HOM05D001850 ORTHO05D012467 2.4e-19 99.4 101 58.4
BcaB02g06871 Brassica carinata HOM05D001850 ORTHO05D012467 5.4e-19 98.2 91 60.4
BcaB02g06873 Brassica carinata HOM05D001850 ORTHO05D012467 5.4e-19 98.2 91 60.4
BolC5t29112H Brassica oleracea HOM05D001850 ORTHO05D012467 2.7e-18 95.9 91 59.3
C04p01710 Brassica napus HOM05D001850 ORTHO05D012467 7.8e-18 94.4 101 57.4
BolC4t21823H Brassica oleracea HOM05D001850 ORTHO05D012467 7.8e-18 94.4 101 57.4
A10p03910 Brassica napus HOM05D001850 ORTHO05D012467 1.7e-17 93.2 97 52.6
BraA10t42666Z Brassica rapa HOM05D001850 ORTHO05D012467 1.7e-17 93.2 97 52.6
BolC5t29137H Brassica oleracea HOM05D001850 ORTHO05D012467 3.9e-17 92.0 91 57.1
BcaC05g24402 Brassica carinata HOM05D001850 ORTHO05D012467 5.1e-17 91.7 82 62.2
Thhalv10008905m.g Eutrema salsugineum HOM05D001850 ORTHO05D012467 1.9e-16 89.7 91 52.7
Sp1g04150 Schrenkiella parvula HOM05D001850 ORTHO05D012467 4.3e-16 88.6 91 51.6
A10p03640 Brassica napus HOM05D001850 ORTHO05D002241 7.3e-16 87.8 47 91.5
C05p03560 Brassica napus HOM05D001850 ORTHO05D012467 2.1e-15 86.3 79 60.8
C05p03580 Brassica napus HOM05D001850 ORTHO05D039308 3.6e-15 85.5 88 56.8
Carub.0001s0459 Capsella rubella HOM05D001850 ORTHO05D012467 3.6e-15 85.5 109 42.2
CARHR004780 Cardamine hirsuta HOM05D001850 ORTHO05D012467 1.8e-14 83.2 91 48.4
BcaC02g12520 Brassica carinata HOM05D001850 ORTHO05D095685 2.0e-13 79.7 77 57.1
AL1G15080 Arabidopsis lyrata HOM05D001850 ORTHO05D012467 4.9e-12 75.1 91 47.3
BcaC05g24431 Brassica carinata HOM05D001850 ORTHO05D012467 4.9e-12 75.1 77 50.6
AT1G05291 Arabidopsis thaliana HOM05D001850 ORTHO05D012467 1.9e-11 73.2 91 49.5
BcaC05g24405 Brassica carinata HOM05D001850 ORTHO05D012467 2.4e-11 72.8 70 55.7
BolC5t29134H Brassica oleracea HOM05D001850 ORTHO05D106182 2.1e-10 69.7 43 79.1
Glyma.13G305100 Glycine max HOM05D001850 ORTHO05D002241 4.6e-10 68.6 96 44.8
Psat5g265880 Pisum sativum HOM05D001850 ORTHO05D002241 1.0e-09 67.4 96 42.7
VMungo1127G0002 Vigna mungo HOM05D001850 ORTHO05D002241 1.3e-09 67.0 97 46.4
Sed0006474 Sechium edule HOM05D001850 ORTHO05D002241 1.8e-09 66.6 96 39.6
CiPaw.03G164100 Carya illinoinensis HOM05D001850 ORTHO05D002241 2.3e-09 66.2 94 42.6
Hma1.2p1_2477F.1_g322890 Hydrangea macrophylla HOM05D001850 ORTHO05D002241 2.3e-09 66.2 94 44.7
Phvul.011G107400 Phaseolus vulgaris HOM05D001850 ORTHO05D002241 2.3e-09 66.2 96 45.8
Ca_01566_v3 Cicer arietinum L. HOM05D001850 ORTHO05D002241 3.0e-09 65.9 96 41.7
Dinv10902 Davidia involucrata HOM05D001850 ORTHO05D002241 3.0e-09 65.9 93 37.6
MD09G1103300 Malus domestica HOM05D001850 ORTHO05D002241 3.9e-09 65.5 96 39.6
Lalb_Chr14g0375611 Lupinus albus HOM05D001850 ORTHO05D002241 6.7e-09 64.7 95 41.1
Hund08070 Selenicereus undatus HOM05D001850 ORTHO05D002241 6.7e-09 64.7 93 39.8
CSS0026437 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 8.7e-09 64.3 90 40.0
Glyma.12G197000 Glycine max HOM05D001850 ORTHO05D002241 8.7e-09 64.3 96 42.7
Lj3g0026531 Lotus japonicus HOM05D001850 ORTHO05D002241 8.7e-09 64.3 96 42.7
THA.LOC104800977 Tarenaya hassleriana HOM05D001850 ORTHO05D002241 8.7e-09 64.3 95 42.1
TPR.G30804 Trifolium pratense HOM05D001850 ORTHO05D002241 8.7e-09 64.3 93 40.9
TWI36G0213 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 8.7e-09 64.3 94 39.4
Lj3g0023668 Lotus japonicus HOM05D001850 ORTHO05D002241 1.5e-08 63.5 96 42.7
CANSAT64G2082 Cannabis sativa HOM05D001850 ORTHO05D002241 1.9e-08 63.2 93 37.6
Glyma.12G102600 Glycine max HOM05D001850 ORTHO05D002241 1.9e-08 63.2 97 44.3
Sopen12g001630 Solanum pennellii HOM05D001850 ORTHO05D002241 1.9e-08 63.2 97 38.1
TPR.G19050 Trifolium pratense HOM05D001850 ORTHO05D002241 1.9e-08 63.2 94 42.6
FvH4_6g43740 Fragaria vesca HOM05D001850 ORTHO05D002241 2.5e-08 62.8 93 38.7
FAN14G2170 Fragaria x ananassa HOM05D001850 ORTHO05D002241 2.5e-08 62.8 93 38.7
Solyc12g005700.2 Solanum lycopersicum HOM05D001850 ORTHO05D002241 2.5e-08 62.8 97 37.1
CAN.G80.5 Capsicum annuum HOM05D001850 ORTHO05D002241 3.3e-08 62.4 97 37.1
FAN02G1812 Fragaria x ananassa HOM05D001850 ORTHO05D002241 3.3e-08 62.4 93 38.7
FAN05G5371 Fragaria x ananassa HOM05D001850 ORTHO05D002241 3.3e-08 62.4 93 38.7
FAN09G1434 Fragaria x ananassa HOM05D001850 ORTHO05D002241 3.3e-08 62.4 93 38.7
Prupe.3G222400 Prunus persica HOM05D001850 ORTHO05D002241 3.3e-08 62.4 94 37.2
PGR042G2347 Punica granatum HOM05D001850 ORTHO05D002241 3.3e-08 62.4 96 37.5
VMungo1080G0062 Vigna mungo HOM05D001850 ORTHO05D002241 3.3e-08 62.4 96 40.6
Phvul.005G112300 Phaseolus vulgaris HOM05D001850 ORTHO05D002241 4.3e-08 62.0 95 40.0
AL4G27670 Arabidopsis lyrata HOM05D001850 ORTHO05D002241 5.6e-08 61.6 94 40.4
AT2G32280 Arabidopsis thaliana HOM05D001850 ORTHO05D002241 5.6e-08 61.6 94 40.4
Potri.007G119600 Populus trichocarpa HOM05D001850 ORTHO05D002241 5.6e-08 61.6 96 37.5
Rhsim04G0057400 Rhododendron simsii HOM05D001850 ORTHO05D002241 5.6e-08 61.6 90 37.8
Aa31LG5G4250 Aethionema arabicum HOM05D001850 ORTHO05D002241 7.4e-08 61.2 94 40.4
vmacro09319 Vaccinium macrocarpon HOM05D001850 ORTHO05D002241 7.4e-08 61.2 90 37.8
BcaC02g11336 Brassica carinata HOM05D001850 ORTHO05D002241 9.6e-08 60.8 107 36.4
Thhalv10017335m.g Eutrema salsugineum HOM05D001850 ORTHO05D002241 9.6e-08 60.8 94 39.4
Medtr2g089050 Medicago truncatula HOM05D001850 ORTHO05D002241 9.6e-08 60.8 96 40.6
Nitab4.5_0003429g0040 Nicotiana tabacum HOM05D001850 ORTHO05D002241 9.6e-08 60.8 94 36.2
Peaxi162Scf00012g00308 Petunia axillaris HOM05D001850 ORTHO05D002241 9.6e-08 60.8 94 40.4
Carub.0004s1362 Capsella rubella HOM05D001850 ORTHO05D002241 1.3e-07 60.5 94 39.4
RcHm_v2.0_Chr2g0160471 Rosa chinensis HOM05D001850 ORTHO05D002241 1.3e-07 60.5 97 37.1
Cfa014459 Carpinus fangiana HOM05D001850 ORTHO05D002241 1.6e-07 60.1 94 38.3
Haze_12962 Corylus avellana HOM05D001850 ORTHO05D002241 1.6e-07 60.1 96 38.5
Nn1g06941 Nelumbo nucifera HOM05D001850 ORTHO05D002241 1.6e-07 60.1 96 38.5
PSO541G0036 Papaver somniferum HOM05D001850 ORTHO05D002241 1.6e-07 60.1 95 38.9
PSO675G8180 Papaver somniferum HOM05D001850 ORTHO05D002241 1.6e-07 60.1 95 38.9
Sp4g14670 Schrenkiella parvula HOM05D001850 ORTHO05D002241 1.6e-07 60.1 94 40.4
Actinidia30502 Actinidia chinensis HOM05D001850 ORTHO05D002241 2.1e-07 59.7 93 35.5
BcaB02g10479 Brassica carinata HOM05D001850 ORTHO05D002241 2.8e-07 59.3 94 39.4
A05p13090 Brassica napus HOM05D001850 ORTHO05D002241 2.8e-07 59.3 94 38.3
C04p17340 Brassica napus HOM05D001850 ORTHO05D002241 2.8e-07 59.3 94 38.3
BolC4t23285H Brassica oleracea HOM05D001850 ORTHO05D002241 2.8e-07 59.3 94 38.3
BraA05t20248Z Brassica rapa HOM05D001850 ORTHO05D002241 2.8e-07 59.3 94 38.3
GSVIVG01030648001 Vitis vinifera HOM05D001850 ORTHO05D002241 2.8e-07 59.3 96 36.5
CARHR126090 Cardamine hirsuta HOM05D001850 ORTHO05D002241 3.7e-07 58.9 94 38.3
Medtr4g092130 Medicago truncatula HOM05D001850 ORTHO05D002241 3.7e-07 58.9 92 39.1
Nitab4.5_0001302g0040 Nicotiana tabacum HOM05D001850 ORTHO05D011118 3.7e-07 58.9 93 39.8
Aqoxy4G02134 Aquilegia oxysepala HOM05D001850 ORTHO05D002241 4.8e-07 58.5 93 33.3
MBI02_g02474_MAGBIO Magnolia biondii HOM05D001850 ORTHO05D002241 4.8e-07 58.5 94 37.2
Manes.12G077300 Manihot esculenta HOM05D001850 ORTHO05D002241 4.8e-07 58.5 96 35.4
Lalb_Chr03g0028961 Lupinus albus HOM05D001850 ORTHO05D002241 8.1e-07 57.8 97 43.3
MSTRG.12294 Avicennia marina HOM05D001850 ORTHO05D002241 1.1e-06 57.4 93 36.6
Glyma.08G062400 Glycine max HOM05D001850 ORTHO05D002241 1.1e-06 57.4 92 38.0
Prupe.4G029600 Prunus persica HOM05D001850 ORTHO05D002241 1.1e-06 57.4 93 36.6
Duzib132G1271 Durio zibethinus HOM05D001850 ORTHO05D002241 1.4e-06 57.0 96 35.4
Duzib248G0344 Durio zibethinus HOM05D001850 ORTHO05D002241 1.4e-06 57.0 96 35.4
Gohir.D12G139400 Gossypium hirsutum HOM05D001850 ORTHO05D002241 1.4e-06 57.0 96 36.5
Gorai.008G150400 Gossypium raimondii HOM05D001850 ORTHO05D002241 1.4e-06 57.0 96 36.5
CANSAT56G1357 Cannabis sativa HOM05D001850 ORTHO05D002241 1.8e-06 56.6 93 35.5
Lj1A1222G63 Lonicera japonica HOM05D001850 ORTHO05D002241 1.8e-06 56.6 93 35.5
Nn1g03731 Nelumbo nucifera HOM05D001850 ORTHO05D002241 1.8e-06 56.6 95 32.6
Oeu058168.1 Olea europaea HOM05D001850 ORTHO05D002241 1.8e-06 56.6 92 33.7
Oeu058170.1 Olea europaea HOM05D001850 ORTHO05D002241 1.8e-06 56.6 92 33.7
Thecc.02G164100 Theobroma cacao HOM05D001850 ORTHO05D002241 1.8e-06 56.6 96 35.4
TWI18G1331 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 1.8e-06 56.6 96 36.5
TWI63G1266 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 1.8e-06 56.6 96 36.5
Actinidia36907 Actinidia chinensis HOM05D001850 ORTHO05D002241 2.4e-06 56.2 96 35.4
arahy.Tifrunner.gnm1.ann1.3MI1ZW Arachis hypogaea HOM05D001850 ORTHO05D002241 2.4e-06 56.2 98 35.7
arahy.Tifrunner.gnm1.ann1.WRD1HJ Arachis hypogaea HOM05D001850 ORTHO05D002241 2.4e-06 56.2 98 35.7
Eucgr.E03595 Eucalyptus grandis HOM05D001850 ORTHO05D002241 2.4e-06 56.2 93 33.3
Sc12g0002460 Simmondsia chinensis HOM05D001850 ORTHO05D002241 2.4e-06 56.2 96 35.4
THA.LOC104807909 Tarenaya hassleriana HOM05D001850 ORTHO05D002241 2.4e-06 56.2 95 36.8
CiPaw.10G066500 Carya illinoinensis HOM05D001850 ORTHO05D002241 3.1e-06 55.8 94 35.1
Psat7g197960 Pisum sativum HOM05D001850 ORTHO05D002241 3.1e-06 55.8 94 38.3
QL05p077191 Quercus lobata HOM05D001850 ORTHO05D002241 3.1e-06 55.8 95 33.7
QL93p0073_1299 Quercus lobata HOM05D001850 ORTHO05D002241 3.1e-06 55.8 95 33.7
CSS0013632 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 4.0e-06 55.5 95 36.8
PGR042G2293 Punica granatum HOM05D001850 ORTHO05D002241 4.0e-06 55.5 107 32.7
CSS0043908 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 5.3e-06 55.1 95 36.8
ECA236G2944 Erigeron canadensis HOM05D001850 ORTHO05D002241 5.3e-06 55.1 93 35.5
Hma1.2p1_0731F.1_g209940 Hydrangea macrophylla HOM05D001850 ORTHO05D002241 5.3e-06 55.1 93 32.3
Atru.chr10.2042 Acer truncatum HOM05D001850 ORTHO05D002241 6.9e-06 54.7 92 38.0
arahy.Tifrunner.gnm1.ann1.GRPF7N Arachis hypogaea HOM05D001850 ORTHO05D002241 9.0e-06 54.3 96 37.5
arahy.Tifrunner.gnm1.ann1.NPPN3F Arachis hypogaea HOM05D001850 ORTHO05D002241 9.0e-06 54.3 96 37.5
A03p18100 Brassica napus HOM05D001850 ORTHO05D002241 9.0e-06 54.3 107 32.7
BraA03t11069Z Brassica rapa HOM05D001850 ORTHO05D002241 9.0e-06 54.3 107 32.7
Cc02_g11780 Coffea canephora HOM05D001850 ORTHO05D002241 9.0e-06 54.3 93 37.6


User provided reference genes

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