Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 2.8e-162 575.5 342 100.0
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 9.8e-160 567.0 342 99.1
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 2.2e-159 565.8 342 98.8
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 2.3e-156 555.8 343 97.1
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 2.3e-156 555.8 343 97.1
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 2.8e-154 548.9 342 95.3
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 2.5e-147 525.8 345 91.6
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 3.6e-146 521.9 345 91.6
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 8.1e-146 520.8 345 91.3
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 6.8e-145 517.7 345 91.3
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 8.9e-145 517.3 345 91.0
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 5.8e-144 514.6 345 90.4
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 3.4e-136 488.8 345 83.2
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 3.1e-113 412.5 342 76.3
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 1.7e-90 337.0 320 56.2
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.2e-88 330.9 318 55.0
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 3.8e-87 325.9 342 52.3
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 2.1e-85 320.1 338 61.2
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 2.7e-85 319.7 318 63.2
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 3.6e-85 319.3 318 59.7
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 3.0e-84 316.2 320 61.2
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 3.0e-84 316.2 318 65.7
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 3.9e-84 315.8 312 63.1
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 3.9e-84 315.8 329 59.9
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 6.7e-84 315.1 325 50.2
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 6.7e-84 315.1 335 60.6
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 3.3e-83 312.8 318 59.4
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.3e-83 312.8 318 59.7
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 4.4e-83 312.4 346 59.8
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 7.4e-83 311.6 316 59.2
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.3e-82 310.8 313 60.7
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 2.2e-82 310.1 329 52.3
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 2.2e-82 310.1 323 63.5
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 2.8e-82 309.7 319 56.7
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 3.7e-82 309.3 326 49.7
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 6.3e-82 308.5 320 60.0
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 8.2e-82 308.1 327 59.3
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 1.4e-81 307.4 327 56.3
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.8e-81 307.0 345 49.0
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.4e-81 306.6 326 50.3
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 3.1e-81 306.2 318 61.6
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 5.3e-81 305.4 326 50.3
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 2.6e-80 303.1 333 60.4
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 3.4e-80 302.8 320 60.0
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 4.5e-80 302.4 317 51.7
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 5.9e-80 302.0 333 51.1
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 5.9e-80 302.0 343 60.6
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 7.7e-80 301.6 320 57.8
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 3.8e-79 299.3 321 59.2
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 3.8e-79 299.3 313 56.9
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 6.5e-79 298.5 345 49.3
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 6.5e-79 298.5 345 49.6
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 6.5e-79 298.5 345 49.6
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 8.5e-79 298.1 318 51.3
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.4e-78 297.4 318 51.3
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 1.9e-78 297.0 317 62.5
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 3.2e-78 296.2 299 52.5
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 1.6e-77 293.9 317 49.8
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.7e-77 293.1 315 62.9
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 8.0e-77 291.6 318 50.3
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 3.0e-76 289.7 299 63.2
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 3.0e-76 289.7 318 61.0
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 3.9e-76 289.3 331 59.8
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 2.0e-75 287.0 318 55.7
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 4.4e-75 285.8 320 58.1
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 5.7e-75 285.4 346 45.4
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 5.7e-75 285.4 318 54.7
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 9.7e-75 284.6 298 52.0
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 3.7e-74 282.7 320 59.7
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 1.4e-73 280.8 326 48.2
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 1.4e-73 280.8 346 46.5
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 2.4e-73 280.0 340 47.9
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 5.3e-73 278.9 316 58.9
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 7.7e-72 275.0 342 45.0
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 7.7e-72 275.0 318 47.5
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.2e-71 273.5 314 47.8
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 6.5e-71 271.9 316 57.6
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 1.0e-68 264.6 331 43.5
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.4e-68 264.2 316 46.2
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 5.2e-68 262.3 340 53.5
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 3.3e-67 259.6 320 47.5
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 5.7e-67 258.8 319 46.1
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 9.7e-67 258.1 317 45.7
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 5.3e-65 252.3 318 42.8
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.0e-64 250.4 318 42.8
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 2.1e-61 240.4 318 56.0
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 3.6e-61 239.6 317 42.9
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 6.3e-58 228.8 319 50.5
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 1.1e-57 228.0 342 39.5
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 3.5e-56 223.0 268 46.3
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 4.2e-54 216.1 231 65.4
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 1.5e-43 181.0 164 55.5
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.0e-43 180.6 167 56.3
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.1e-37 160.6 164 50.0
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 1.9e-33 147.5 112 62.5
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 8.6e-31 138.7 100 64.0
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 3.3e-30 136.7 155 50.3
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.3e-28 130.6 98 64.3
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 8.9e-28 128.6 108 61.1
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.1e-22 111.7 182 39.0
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 2.5e-22 110.5 183 55.2
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.3e-15 88.2 97 43.3
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 9.6e-14 82.0 113 43.4
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.1e-08 64.3 109 40.4
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 9.6e-06 55.5 66 45.5


User provided reference genes

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