Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.0e-115 419.1 206 100.0
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.0e-115 419.1 206 100.0
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 3.2e-113 411.8 206 98.5
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 3.2e-113 411.8 206 98.5
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 1.4e-105 386.3 206 93.2
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.2e-96 356.7 206 86.4
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 6.9e-92 340.9 208 81.7
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 3.4e-91 338.6 210 80.5
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 4.2e-89 331.6 210 79.0
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 4.6e-88 328.2 209 78.9
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.2e-83 313.5 210 74.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 4.9e-82 308.1 230 70.9
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 5.7e-78 294.7 189 75.1
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 1.3e-77 293.5 175 81.1
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.3e-77 293.5 183 76.5
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 2.1e-77 292.7 200 71.0
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 3.7e-77 292.0 186 76.3
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 4.8e-77 291.6 175 80.6
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 8.2e-77 290.8 175 78.9
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.1e-76 288.9 175 78.9
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 4.1e-76 288.5 175 79.4
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 4.1e-76 288.5 175 79.4
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 5.3e-76 288.1 175 78.9
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 5.3e-76 288.1 175 78.3
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 5.3e-76 288.1 211 69.2
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 9.0e-76 287.3 211 69.2
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 2.6e-75 285.8 175 78.3
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 5.9e-75 284.6 175 77.1
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 5.9e-75 284.6 198 71.2
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.3e-74 283.5 175 76.6
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.3e-74 283.5 185 75.1
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 2.9e-74 282.3 190 71.6
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 8.5e-74 280.8 175 78.3
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.4e-73 280.0 188 72.9
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.9e-73 279.6 175 77.1
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 3.2e-73 278.9 191 73.3
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 3.2e-73 278.9 174 76.4
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 4.2e-73 278.5 210 67.1
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 4.2e-73 278.5 186 73.1
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 7.2e-73 277.7 188 72.3
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 9.3e-73 277.3 180 73.3
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 7.9e-72 274.2 202 66.3
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 7.9e-72 274.2 175 74.3
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 7.9e-72 274.2 175 71.4
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.3e-71 272.7 175 73.7
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 3.9e-71 271.9 175 73.1
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 5.1e-71 271.6 175 74.9
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 8.7e-71 270.8 203 65.0
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 8.7e-71 270.8 176 72.2
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 8.7e-71 270.8 175 74.9
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.1e-70 270.4 205 64.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.5e-70 269.2 175 72.0
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 3.3e-70 268.9 175 73.7
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 5.7e-70 268.1 201 66.2
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 5.7e-70 268.1 203 65.5
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 7.4e-70 267.7 182 69.8
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 2.8e-69 265.8 175 70.9
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 6.3e-69 264.6 179 70.4
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 6.3e-69 264.6 175 71.4
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 8.2e-69 264.2 186 67.7
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 8.2e-69 264.2 175 69.7
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 8.2e-69 264.2 182 68.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.1e-68 263.8 196 65.8
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 1.4e-68 263.5 175 69.7
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 2.4e-68 262.7 189 67.7
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 4.1e-68 261.9 178 71.9
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 6.9e-68 261.2 176 69.9
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 9.1e-68 260.8 175 69.7
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.5e-67 260.0 175 69.1
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 5.9e-67 258.1 175 68.6
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 1.0e-66 257.3 177 70.6
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 2.9e-66 255.8 175 68.0
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 8.5e-66 254.2 201 65.2
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-65 252.7 221 65.6
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.5e-65 252.7 174 67.2
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.2e-65 252.3 175 68.6
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 5.5e-65 251.5 144 80.6
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 2.7e-64 249.2 165 71.5
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.9e-63 245.4 180 67.8
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 5.1e-63 245.0 202 59.4
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.5e-62 243.4 141 80.1
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 8.2e-61 237.7 141 79.4
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.4e-60 236.1 152 81.6
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 6.9e-60 234.6 205 58.0
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.3e-58 230.3 141 80.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 2.9e-58 229.2 173 62.4
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 4.2e-57 225.3 194 56.7
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 5.5e-57 224.9 197 55.8
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.2e-56 223.8 170 60.6
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 2.7e-56 222.6 143 72.7
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 6.1e-56 221.5 170 60.0
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.0e-55 220.7 182 65.4
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.8e-55 219.9 175 63.4
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.7e-53 213.4 172 62.2
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 5.9e-51 204.9 180 61.7
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 8.5e-50 201.1 141 66.7
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.0e-47 194.1 164 58.5
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 4.4e-46 188.7 123 75.6
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 5.7e-46 188.3 99 97.0
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 9.1e-44 181.0 123 70.7
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.3e-42 177.2 170 58.2
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.1e-41 174.1 85 95.3
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 3.2e-41 172.6 85 94.1
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 4.2e-41 172.2 136 66.9
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 4.0e-39 165.6 184 46.7
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 2.8e-37 159.5 172 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 2.4e-36 156.4 123 61.0
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.2e-32 144.1 228 39.9
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 5.9e-27 125.2 174 40.8
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 8.6e-26 121.3 64 93.8
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.0e-23 112.5 66 87.9
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 7.5e-22 108.2 56 82.1
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 9.2e-20 101.3 94 55.3
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.2e-19 100.9 87 63.2
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.9e-17 93.6 82 57.3
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 4.3e-09 65.9 54 61.1
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 9.5e-09 64.7 140 29.3
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 4.7e-08 62.4 141 31.2
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 6.2e-08 62.0 34 76.5
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 2.3e-07 60.1 141 30.5
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 4.4e-06 55.8 49 53.1
PRCOL_00002581 Prasinoderma coloniale HOM05D005663 ORTHO05D002254 7.5e-06 55.1 194 25.8
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 9.9e-06 54.7 200 27.0
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 9.9e-06 54.7 33 72.7


User provided reference genes

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