Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 6.7e-268 926.8 470 100.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 7.2e-262 906.7 476 97.1
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.0e-236 823.2 472 90.3
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 5.2e-236 820.8 474 89.9
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 2.6e-235 818.5 472 89.8
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 2.4e-225 785.4 481 84.8
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.0e-207 726.9 479 76.8
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 3.2e-201 705.3 485 75.5
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.1e-197 692.6 483 75.4
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.6e-197 691.8 477 75.1
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 6.8e-196 687.6 490 73.1
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.6e-192 676.4 480 74.8
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.0e-172 607.4 478 67.2
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 2.2e-170 602.8 478 64.2
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.9e-170 601.7 478 66.1
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.9e-161 573.2 435 69.2
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.4e-143 513.8 486 56.0
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.2e-139 500.7 475 56.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.7e-138 496.9 467 56.5
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 7.2e-137 491.5 486 54.7
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.4e-135 487.3 485 54.4
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 2.0e-134 483.4 489 50.3
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 4.4e-134 482.3 482 53.3
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.7e-133 479.2 481 52.2
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.4e-132 476.5 481 53.8
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 7.0e-132 474.9 485 51.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 2.0e-131 473.4 479 52.8
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.5e-130 468.0 404 62.6
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 4.2e-129 465.7 484 50.4
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.2e-128 464.2 487 51.7
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 8.0e-128 461.5 485 51.5
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.4e-127 460.7 481 51.8
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.8e-127 460.3 485 49.9
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-127 460.3 485 50.1
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.8e-127 460.3 489 50.5
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 3.0e-127 459.5 483 51.6
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.8e-127 458.0 485 49.7
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.2e-126 457.6 487 50.1
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.5e-126 457.2 483 50.9
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 5.7e-126 455.3 487 50.1
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 7.5e-126 454.9 487 49.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.3e-125 454.1 485 50.7
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-125 454.1 484 49.4
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-125 453.8 484 49.6
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.7e-125 453.8 482 50.4
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.2e-125 453.4 484 51.2
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-125 453.0 483 49.7
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 6.3e-125 451.8 483 49.7
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.1e-124 451.1 486 50.4
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-124 450.7 483 49.7
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.8e-124 450.3 493 51.1
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.8e-124 450.3 481 51.1
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 3.1e-124 449.5 480 50.4
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.1e-124 449.5 485 49.7
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.1e-124 449.5 485 49.9
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 5.3e-124 448.7 483 49.9
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 7.0e-124 448.4 482 49.8
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-123 447.6 482 49.4
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 2.7e-123 446.4 487 48.5
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 7.7e-123 444.9 485 49.9
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.3e-122 444.1 488 50.8
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.3e-122 444.1 475 49.9
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.0e-122 442.2 493 48.1
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 5.0e-122 442.2 492 48.4
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 5.0e-122 442.2 492 48.4
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 3.2e-121 439.5 480 49.0
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.2e-120 437.6 488 49.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.1e-120 436.8 482 49.2
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 4.7e-120 435.6 488 49.4
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 6.1e-120 435.3 483 47.6
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.3e-119 433.3 488 49.0
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.2e-118 431.0 485 48.5
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.2e-118 431.0 481 49.1
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 1.2e-118 431.0 498 48.4
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 2.0e-118 430.3 489 49.5
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.0e-118 430.3 484 49.2
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 2.6e-118 429.9 473 48.8
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.6e-118 429.9 467 48.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 5.7e-118 428.7 485 48.0
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 9.8e-118 427.9 472 48.7
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 3.7e-117 426.0 484 48.8
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 4.8e-117 425.6 490 48.2
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 4.8e-117 425.6 485 48.0
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.8e-117 425.6 488 47.1
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 6.3e-117 425.2 489 48.9
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 8.3e-117 424.9 484 48.6
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.4e-116 424.1 478 50.0
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 9.1e-116 421.4 472 49.2
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 7.7e-115 418.3 486 47.5
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 7.7e-115 418.3 483 48.4
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.6e-114 415.2 479 45.5
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.3e-113 412.9 481 47.6
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.3e-113 412.9 484 47.5
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.1e-112 410.2 488 46.5
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.8e-112 409.8 479 45.9
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 3.0e-111 406.4 403 53.1
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 3.0e-111 406.4 369 52.6
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 6.8e-111 405.2 370 55.9
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 6.8e-111 405.2 516 43.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 5.7e-110 402.1 475 47.8
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 6.3e-109 398.7 483 46.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-108 396.7 483 46.8
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.5e-107 392.5 482 45.9
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 7.8e-107 391.7 477 47.2
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.9e-106 389.8 473 45.7
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.2e-102 377.9 467 45.8
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 4.4e-102 375.9 484 43.2
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.9e-97 360.5 476 43.5
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.4e-95 354.4 466 44.2
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 7.5e-94 348.6 378 49.7
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.0e-86 323.9 357 48.5
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 4.4e-86 322.8 466 41.6
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 4.1e-84 316.2 322 49.7
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.7e-82 310.8 527 35.5
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 5.1e-82 309.3 404 43.3
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 8.6e-82 308.5 291 53.6
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-81 307.8 506 40.1
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.3e-81 306.6 457 41.1
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 8.1e-80 302.0 291 54.0
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.0e-78 297.4 291 52.6
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.6e-78 297.0 479 38.8
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-74 284.3 467 39.0
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 8.7e-74 282.0 246 56.5
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.1e-63 248.4 465 34.8
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-62 245.0 429 35.4
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.4e-62 243.4 398 36.7
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 4.2e-60 236.5 356 43.3
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.1e-59 234.2 535 32.9
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.0e-58 231.9 181 63.5
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-56 224.9 276 42.4
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-55 221.5 151 69.5
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 4.0e-55 219.9 179 60.3
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.2e-54 218.4 471 33.1
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.5e-54 218.0 274 44.9
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.3e-53 214.9 355 35.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 4.9e-53 213.0 624 30.4
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.5e-52 209.5 369 34.4
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.5e-51 206.8 372 36.0
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.5e-49 201.4 243 46.9
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.3e-48 198.4 475 30.5
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 4.5e-46 189.9 482 31.5
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-44 185.3 483 30.6
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-41 175.3 312 36.2
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.3e-41 173.7 172 54.1
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 6.3e-40 169.5 231 43.7
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.9e-39 166.0 226 44.7
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 3.2e-36 157.1 402 28.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 7.2e-36 156.0 274 35.8
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.2e-35 155.2 434 30.0
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 6.1e-35 152.9 173 45.1
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-33 148.3 327 33.3
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.5e-33 147.5 192 45.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 2.8e-32 144.1 249 36.1
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 8.2e-32 142.5 253 36.0
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 4.7e-27 126.7 90 60.0
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 2.3e-26 124.4 115 53.9
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.1e-26 123.2 95 63.2
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-25 121.7 118 53.4
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 5.7e-25 119.8 140 47.1
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 8.2e-24 115.9 459 25.5
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.5e-22 110.5 122 45.1
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 2.1e-19 101.3 127 39.4
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 6.1e-19 99.8 139 45.3
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-18 98.2 132 42.4
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-18 97.8 132 42.4
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 4.1e-15 87.0 296 30.4
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 3.5e-14 84.0 115 40.9
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 3.8e-13 80.5 131 37.4
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.1e-12 79.0 168 29.2
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-11 74.7 72 52.8
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 7.0e-07 59.7 78 32.1


User provided reference genes

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