Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 1.3e-155 553.1 301 100.0
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 1.3e-155 553.1 301 100.0
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 4.6e-153 544.7 303 98.7
A09p00590 Brassica napus HOM05D012121 ORTHO05D005694 1.6e-126 456.4 305 86.9
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 3.1e-125 452.2 306 84.0
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 6.9e-125 451.1 305 85.9
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 2.4e-101 372.9 309 70.9
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 7.7e-92 341.3 311 69.5
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 3.3e-74 282.7 317 58.4
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 1.3e-70 270.8 320 55.0
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 3.3e-66 256.1 318 55.0
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 3.3e-58 229.6 320 50.9
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 8.9e-48 194.9 322 45.7
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 3.6e-25 119.8 140 55.0
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 9.9e-15 85.1 346 29.2
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 9.3e-13 78.6 351 29.6
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 2.7e-12 77.0 332 28.3
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 6.0e-12 75.9 239 31.8
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 3.9e-11 73.2 345 28.7
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 1.1e-10 71.6 359 27.6
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 1.3e-09 68.2 224 32.1
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 1.6e-09 67.8 345 30.7
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.6e-09 67.8 346 28.3
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 3.7e-09 66.6 348 26.4
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 4.8e-09 66.2 228 34.2
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 8.2e-09 65.5 345 29.3
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 1.1e-08 65.1 144 36.8
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.1e-08 65.1 348 28.2
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.4e-08 64.7 308 30.5
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 1.4e-08 64.7 138 38.4
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 3.1e-08 63.5 342 26.6
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 3.1e-08 63.5 330 28.2
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 2.0e-07 60.8 100 38.0
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 2.6e-07 60.5 323 30.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.6e-07 60.5 306 27.8
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 2.6e-07 60.5 335 27.8
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 7.6e-07 58.9 344 29.7
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 7.6e-07 58.9 325 26.2
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 2.2e-06 57.4 143 32.2
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 2.9e-06 57.0 308 26.6
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 6.5e-06 55.8 230 34.8
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 6.5e-06 55.8 321 28.3
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 8.4e-06 55.5 318 29.6
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 8.4e-06 55.5 317 26.2


User provided reference genes

Program Settings