Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-141 506.5 262 100.0
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 8.1e-138 493.8 262 96.9
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 9.2e-134 480.3 262 95.8
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-133 479.9 262 95.8
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.2e-133 479.9 262 95.8
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 2.7e-133 478.8 266 94.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.5e-133 478.4 247 100.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.0e-132 476.9 247 99.6
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-132 476.5 262 95.4
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.4e-129 466.5 266 92.1
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.8e-129 466.1 265 91.7
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.0e-128 462.6 265 91.3
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 5.8e-128 461.1 269 89.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.1e-126 456.8 247 96.0
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.1e-126 456.8 247 96.0
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.4e-126 456.4 261 90.4
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.6e-109 399.8 245 86.1
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 6.0e-109 397.9 271 76.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 5.8e-104 381.3 271 73.4
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 3.5e-101 372.1 267 72.7
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.3e-100 369.4 269 70.6
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 3.0e-100 369.0 267 70.4
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.9e-100 368.6 268 73.9
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.5e-99 365.9 263 72.6
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 2.5e-99 365.9 267 71.5
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 7.4e-99 364.4 267 70.0
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 9.7e-99 364.0 267 70.8
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.6e-98 363.2 267 68.2
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.6e-98 363.2 272 71.3
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 6.3e-98 361.3 269 69.5
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 8.2e-98 360.9 268 69.8
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.8e-97 359.8 270 71.1
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 3.1e-97 359.0 270 71.1
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 4.1e-97 358.6 270 71.1
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.9e-97 357.8 266 69.9
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 9.0e-97 357.5 265 69.4
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 9.0e-97 357.5 265 68.3
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-96 355.5 263 71.1
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-96 355.5 263 71.1
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 264 70.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 264 70.8
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.9e-96 354.8 266 69.5
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 7.7e-96 354.4 263 70.7
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.7e-96 354.4 263 70.7
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 7.7e-96 354.4 265 72.1
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 2.2e-95 352.8 268 69.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 2.2e-95 352.8 275 68.0
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 2.9e-95 352.4 197 94.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 2.9e-95 352.4 197 94.4
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.9e-95 352.4 265 70.2
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.9e-95 352.4 271 70.1
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 5.0e-95 351.7 272 68.0
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 5.0e-95 351.7 263 70.0
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 6.5e-95 351.3 270 69.6
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 6.5e-95 351.3 270 69.6
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 6.5e-95 351.3 266 68.8
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.1e-94 350.5 268 67.9
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.4e-94 350.1 265 70.2
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.9e-94 349.7 274 67.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.9e-94 349.7 271 67.5
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.5e-94 349.4 268 68.3
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.5e-94 349.4 270 68.1
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 2.5e-94 349.4 266 68.4
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.2e-94 348.6 273 67.8
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.2e-94 348.6 272 69.9
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.2e-94 348.6 267 68.5
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 5.5e-94 348.2 265 67.9
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 5.5e-94 348.2 261 68.2
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 5.5e-94 348.2 265 69.4
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 7.2e-94 347.8 274 67.2
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.1e-93 346.3 263 68.8
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.1e-93 346.3 263 68.4
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 3.6e-93 345.5 267 67.8
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 4.6e-93 345.1 268 67.2
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.0e-92 344.0 265 69.8
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 1.4e-92 343.6 268 66.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.1e-91 340.5 266 68.4
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.3e-91 338.6 269 68.0
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 5.7e-91 338.2 267 67.0
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 5.7e-91 338.2 270 66.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 5.7e-91 338.2 269 69.5
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 7.4e-91 337.8 263 67.7
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 9.7e-91 337.4 272 66.2
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.7e-90 336.7 259 68.3
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.7e-90 336.7 259 66.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.2e-90 336.3 266 66.5
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 2.8e-90 335.9 263 68.1
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 3.7e-90 335.5 266 66.5
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.3e-89 331.6 261 67.8
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.2e-88 330.5 261 67.8
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.4e-88 328.9 270 64.8
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.9e-87 325.9 274 63.5
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 6.5e-87 324.7 254 67.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.9e-86 323.2 257 63.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 9.4e-86 320.9 221 69.7
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.7e-85 319.3 247 66.8
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 6.3e-82 308.1 303 57.1
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 8.2e-82 307.8 236 68.6
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 3.1e-81 305.8 191 76.4
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 7.0e-81 304.7 257 61.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 9.1e-81 304.3 266 61.7
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 5.2e-76 288.5 266 59.8
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.1e-75 287.3 241 59.8
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 8.2e-74 281.2 221 61.5
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 5.3e-73 278.5 184 73.4
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.5e-70 269.6 194 71.6
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.1e-69 266.5 266 56.0
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.8e-68 263.5 208 60.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.3e-68 263.1 213 58.2
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.0e-68 262.7 244 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 5.7e-67 258.5 183 65.0
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 4.8e-66 255.4 180 65.0
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 5.3e-65 251.9 244 57.0
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.5e-64 249.2 225 58.7
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 1.6e-61 240.4 262 58.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 1.6e-61 240.4 262 58.0
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 4.7e-61 238.8 262 57.6
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.3e-58 230.7 174 71.8
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 2.0e-51 206.8 141 68.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 7.8e-48 194.9 132 74.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.2e-43 181.0 153 52.9
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.9e-38 163.7 119 71.4
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 3.3e-38 162.9 206 40.3
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.2e-37 158.7 157 55.4
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.4e-35 152.9 115 64.3
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.5e-27 127.5 179 37.4
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.0e-27 127.1 98 69.4
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-23 114.8 68 80.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-18 97.4 70 67.1
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.8e-18 96.3 69 63.8
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 5.1e-15 85.9 163 28.8
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 5.1e-15 85.9 58 69.0
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 9.0e-12 75.1 60 63.3
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.7e-10 70.9 85 50.6
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 3.2e-09 66.6 39 79.5
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.5e-06 57.0 113 33.6
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 4.3e-06 56.2 149 25.5
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 5.6e-06 55.8 124 26.6
CBR_g55230 Chara braunii HOM05D001556 ORTHO05D001505 9.6e-06 55.1 138 25.4
Cre01.g027000 Chlamydomonas reinhardtii HOM05D001556 ORTHO05D001505 9.6e-06 55.1 129 27.9


User provided reference genes

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