Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 0.0e+00 1091.6 549 100.0
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 5.2e-272 940.6 479 98.7
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 6.8e-272 940.3 560 88.0
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 1.5e-266 922.5 473 98.1
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 5.3e-248 860.9 478 92.7
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 5.8e-247 857.4 520 87.1
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 2.9e-222 775.4 581 73.8
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 2.0e-207 726.1 579 71.0
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 1.6e-188 663.3 570 65.4
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 1.3e-182 643.7 572 64.3
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 2.3e-163 579.7 619 55.7
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 6.2e-148 528.5 615 52.8
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 3.5e-119 433.0 395 63.5
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 2.2e-108 397.1 649 41.0
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.1e-104 384.8 628 41.7
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.9e-104 384.0 623 41.1
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 2.0e-101 374.0 640 40.5
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 9.7e-101 371.7 640 40.5
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 6.3e-100 369.0 641 39.5
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 1.8e-99 367.5 639 39.0
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 2.4e-99 367.1 637 40.5
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 9.1e-99 365.2 649 39.4
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 1.2e-98 364.8 648 38.9
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 1.5e-98 364.4 315 63.2
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 1.3e-97 361.3 593 42.2
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 6.5e-97 359.0 651 39.2
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 8.5e-97 358.6 643 38.6
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 1.5e-96 357.8 662 39.0
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 2.5e-96 357.1 624 39.1
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 1.6e-95 354.4 646 38.7
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 2.1e-95 354.0 641 39.8
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 8.0e-95 352.1 683 37.8
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 3.3e-93 346.7 634 37.7
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 5.7e-93 345.9 683 37.8
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 9.7e-93 345.1 672 37.1
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 2.8e-92 343.6 591 39.6
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 4.8e-92 342.8 634 39.0
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 2.4e-91 340.5 608 40.5
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 7.0e-91 339.0 633 40.3
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 9.1e-91 338.6 633 39.3
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.9e-88 330.9 621 37.8
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 1.9e-88 330.9 649 37.8
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 2.5e-88 330.5 618 39.6
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 9.4e-88 328.6 652 37.9
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 2.3e-86 323.9 654 36.2
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 8.8e-86 322.0 583 37.7
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 1.5e-85 321.2 489 43.6
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 2.6e-85 320.5 629 38.6
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 3.4e-85 320.1 649 37.0
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 3.4e-85 320.1 628 38.1
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 1.3e-84 318.2 667 35.7
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 2.4e-83 313.9 634 37.2
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 1.2e-82 311.6 575 39.1
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.6e-82 311.2 478 44.8
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 1.6e-82 311.2 538 39.0
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 1.3e-81 308.1 663 35.6
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 1.3e-81 308.1 650 34.8
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 2.5e-80 303.9 655 34.5
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 9.4e-80 302.0 481 38.9
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 9.4e-80 302.0 449 45.4
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.6e-79 301.2 656 35.2
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 2.1e-79 300.8 651 33.8
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 5.2e-78 296.2 672 34.5
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 1.5e-77 294.7 680 33.5
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 1.8e-75 287.7 475 41.5
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 4.1e-75 286.6 721 32.0
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 1.0e-73 282.0 622 34.2
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.2e-71 275.0 495 36.8
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 1.6e-71 274.6 466 39.7
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 1.6e-71 274.6 629 35.6
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 3.6e-71 273.5 654 33.3
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 8.9e-70 268.9 639 31.5
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 1.5e-69 268.1 537 35.0
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 3.4e-69 266.9 640 31.4
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 7.0e-67 259.2 634 32.8
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 4.6e-66 256.5 624 30.9
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 8.6e-65 252.3 620 31.8
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 1.1e-64 251.9 650 32.9
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 7.3e-64 249.2 225 63.1
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 1.2e-63 248.4 620 34.0
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 8.0e-63 245.7 695 32.1
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 6.4e-60 236.1 664 31.6
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 7.0e-59 232.6 325 42.8
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 1.9e-56 224.6 501 36.3
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 8.1e-55 219.2 388 38.1
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 4.9e-52 209.9 382 36.4
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 3.5e-50 203.8 317 40.7
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 1.7e-44 184.9 302 41.1
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.2e-44 184.5 313 34.8
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 6.0e-42 176.4 350 35.7
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 8.6e-41 172.6 217 42.9
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 3.6e-39 167.2 353 33.4
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 8.9e-38 162.5 200 47.0
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 8.4e-36 156.0 206 44.2
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 8.4e-36 156.0 297 37.7
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.4e-35 155.2 349 32.1
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 3.0e-33 147.5 341 33.1
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.8e-31 141.0 282 31.2
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 6.4e-28 129.8 366 30.9
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.3e-25 122.1 241 36.1
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 8.7e-25 119.4 250 37.6
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 9.0e-22 109.4 258 33.3
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.6e-21 107.8 327 25.4
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.9e-20 104.4 124 48.4
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 1.2e-18 99.0 262 29.0
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.1e-18 98.2 242 33.5
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.0e-17 95.9 305 29.2
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 2.3e-17 94.7 156 44.9
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.5e-16 91.3 218 30.7
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 4.9e-12 77.0 170 32.9
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 8.7e-09 66.2 307 25.7
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.1e-06 59.3 118 39.0
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 3.1e-06 57.8 120 30.8
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 4.1e-06 57.4 51 52.9
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 5.3e-06 57.0 169 28.4


User provided reference genes

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