Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24107 Brassica carinata HOM05D002242 ORTHO05D002275 6.8e-154 547.4 289 100.0
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 4.4e-153 544.7 287 100.0
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 6.4e-152 540.8 287 99.0
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 8.0e-147 523.9 287 95.1
BcaB01g02293 Brassica carinata HOM05D002242 ORTHO05D002275 1.2e-134 483.4 289 88.2
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.1e-127 460.3 287 87.1
Sp6g01185 Schrenkiella parvula HOM05D002242 ORTHO05D002275 2.6e-121 439.1 288 82.3
AT4G00950 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 1.7e-117 426.4 290 80.0
Thhalv10028866m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 9.6e-116 420.6 292 80.1
AL6G52440 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 2.4e-114 416.0 293 78.8
Carub.0006s3599 Capsella rubella HOM05D002242 ORTHO05D002275 2.9e-112 409.1 297 76.8
CARHR249390 Cardamine hirsuta HOM05D002242 ORTHO05D002275 2.7e-102 375.9 290 74.8
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 5.5e-79 298.5 291 62.5
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 5.2e-69 265.4 290 56.2
THA.LOC104817057 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.4e-61 240.7 289 54.7
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 6.1e-38 162.2 292 42.8
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 1.5e-31 141.0 284 40.5
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 3.3e-31 139.8 291 40.5
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 4.3e-31 139.4 284 39.8
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 2.8e-30 136.7 297 36.4
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 4.7e-30 136.0 289 40.5
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 7.5e-28 128.6 292 39.7
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 7.5e-28 128.6 290 39.3
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 7.5e-28 128.6 292 39.7
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.5e-28 128.6 284 39.4
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.2e-27 127.1 292 39.4
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.9e-26 124.0 290 39.7
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.9e-26 124.0 284 39.4
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.9e-26 124.0 257 40.9
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 7.1e-26 122.1 298 38.9
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 9.2e-26 121.7 290 36.2
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 1.2e-25 121.3 290 37.6
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.2e-25 121.3 298 38.9
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.2e-25 121.3 286 37.4
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 3.5e-25 119.8 288 37.2
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 7.8e-25 118.6 273 37.7
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 7.8e-25 118.6 291 36.8
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 1.0e-24 118.2 271 36.9
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 5.1e-24 115.9 293 37.5
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.6e-24 115.2 287 35.9
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 5.6e-23 112.5 285 33.7
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 4.7e-22 109.4 290 34.8
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 1.4e-21 107.8 275 35.6
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 1.8e-21 107.5 268 35.4
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 6.8e-21 105.5 290 34.1
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 6.8e-21 105.5 293 36.5
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 2.0e-20 104.0 289 35.3
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 4.4e-20 102.8 288 36.8
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 4.4e-20 102.8 288 35.8
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.7e-19 100.9 308 32.8
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.7e-19 99.8 294 34.4
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 3.7e-19 99.8 286 31.8
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.2e-18 96.7 291 35.4
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 5.4e-18 95.9 284 34.5
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 9.2e-18 95.1 284 34.5
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 1.7e-16 90.9 290 32.4
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.7e-16 90.9 282 30.5
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 1.7e-16 90.9 282 29.4
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 3.9e-16 89.7 286 32.2
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 6.6e-16 89.0 293 35.5
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 2.5e-15 87.0 283 31.8
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 7.3e-15 85.5 277 28.2
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 7.3e-15 85.5 273 32.6
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 1.6e-14 84.3 281 31.3
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.1e-14 84.0 291 29.6
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 2.1e-14 84.0 286 31.1
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 2.8e-14 83.6 296 30.4
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.8e-14 83.6 290 32.4
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 3.6e-14 83.2 293 32.1
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 3.6e-14 83.2 292 32.2
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 6.2e-14 82.4 270 33.0
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 6.2e-14 82.4 268 30.6
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 2.4e-13 80.5 288 28.8
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 3.1e-13 80.1 276 29.7
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 5.2e-13 79.3 277 29.2
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 5.2e-13 79.3 277 29.2
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 2.0e-12 77.4 275 28.4
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 2.6e-12 77.0 199 36.7
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 2.6e-12 77.0 275 28.4
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 3.4e-12 76.6 284 31.0
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 4.4e-12 76.3 289 30.8
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 4.4e-12 76.3 269 30.9
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 7.6e-12 75.5 280 30.4
SalBow3G1264 Salvia bowleyana HOM05D002242 ORTHO05D002275 1.7e-11 74.3 281 29.2
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 2.2e-11 73.9 278 30.9
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 2.9e-11 73.6 282 29.8
Atru.chr12.2237 Acer truncatum HOM05D002242 ORTHO05D002275 3.8e-11 73.2 257 32.3
MSTRG.17354 Avicennia marina HOM05D002242 ORTHO05D002275 3.8e-11 73.2 282 29.8
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 4.9e-11 72.8 281 28.1
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 6.4e-11 72.4 289 28.4
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea HOM05D002242 ORTHO05D002275 1.1e-10 71.6 297 33.3
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 1.4e-10 71.2 288 29.9
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 1.9e-10 70.9 289 31.1
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 2.4e-10 70.5 290 29.7
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.2e-10 70.1 206 35.9
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 3.2e-10 70.1 281 27.8
Rhsim01G0174300 Rhododendron simsii HOM05D002242 ORTHO05D002275 3.2e-10 70.1 294 32.0
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 5.4e-10 69.3 279 30.8
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 9.3e-10 68.6 292 27.7
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.2e-09 68.2 282 27.7
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.2e-09 68.2 269 28.3
A10p10510 Brassica napus HOM05D002242 ORTHO05D002275 1.6e-09 67.8 281 27.4
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.6e-09 67.8 287 27.5
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 2.7e-09 67.0 281 27.0
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 4.6e-09 66.2 222 31.5
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 6.0e-09 65.9 171 32.2
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 7.8e-09 65.5 287 26.8
Lj4g0010373 Lotus japonicus HOM05D002242 ORTHO05D002275 1.0e-08 65.1 283 28.3
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 1.3e-08 64.7 287 27.5
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.3e-08 64.7 287 27.5
TPR.G18779 Trifolium pratense HOM05D002242 ORTHO05D002275 1.3e-08 64.7 256 28.1
arahy.Tifrunner.gnm1.ann1.73LR1S Arachis hypogaea HOM05D002242 ORTHO05D002275 1.7e-08 64.3 288 29.9
PGR042G3115 Punica granatum HOM05D002242 ORTHO05D002275 1.7e-08 64.3 317 30.6
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 1.7e-08 64.3 279 26.9
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 2.3e-08 63.9 114 36.8
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 3.0e-08 63.5 203 33.0
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 3.0e-08 63.5 286 25.5
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.6e-08 62.4 287 27.2
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 8.7e-08 62.0 286 27.3
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 1.1e-07 61.6 271 25.8
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.1e-07 61.6 112 38.4
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.5e-07 61.2 279 31.5
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 1.5e-07 61.2 288 27.1
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 1.9e-07 60.8 285 28.8
Rhsim07G0003200 Rhododendron simsii HOM05D002242 ORTHO05D002275 2.5e-07 60.5 119 37.8
Thhalv10014570m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 3.3e-07 60.1 284 26.8
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 3.3e-07 60.1 274 26.6
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 4.3e-07 59.7 273 27.5
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 4.3e-07 59.7 285 28.8
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 4.3e-07 59.7 288 26.7
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 5.6e-07 59.3 286 28.0
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 5.6e-07 59.3 286 31.1
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 5.6e-07 59.3 286 31.1
BcaB08g35662 Brassica carinata HOM05D002242 ORTHO05D002275 7.3e-07 58.9 281 26.7
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 7.3e-07 58.9 283 30.7
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 7.3e-07 58.9 272 28.3
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 9.6e-07 58.5 228 29.8
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 9.6e-07 58.5 108 38.0
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 1.3e-06 58.2 252 27.0
Glyma.06G129800 Glycine max HOM05D002242 ORTHO05D002275 1.3e-06 58.2 296 27.0
PSO478G1176 Papaver somniferum HOM05D002242 ORTHO05D002275 1.3e-06 58.2 285 26.0
Sopen03g022850 Solanum pennellii HOM05D002242 ORTHO05D002275 1.3e-06 58.2 175 30.3
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 1.6e-06 57.8 268 26.1
THA.LOC104825150 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.6e-06 57.8 284 26.8
A02p11370 Brassica napus HOM05D002242 ORTHO05D002275 2.1e-06 57.4 282 27.0
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 2.1e-06 57.4 110 38.2
HanXRQChr16g0524311 Helianthus annuus HOM05D002242 ORTHO05D002275 2.1e-06 57.4 274 27.7
Aa31LG3G9450 Aethionema arabicum HOM05D002242 ORTHO05D002275 2.8e-06 57.0 153 34.0
Solyc03g083050.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 2.8e-06 57.0 180 29.4
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 2.8e-06 57.0 266 29.7
C09p42730 Brassica napus HOM05D002242 ORTHO05D002275 4.8e-06 56.2 286 25.9
BolC9t57149H Brassica oleracea HOM05D002242 ORTHO05D002275 4.8e-06 56.2 286 25.9
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 4.8e-06 56.2 252 27.0
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 4.8e-06 56.2 214 32.2
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 4.8e-06 56.2 203 32.5
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 4.8e-06 56.2 110 41.8
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 6.2e-06 55.8 171 31.6
BcaC03g14465 Brassica carinata HOM05D002242 ORTHO05D002275 8.1e-06 55.5 288 27.4


User provided reference genes

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