Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 2623.2 1288 100.0
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 2558.9 1289 97.8
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 2557.7 1295 97.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 2538.5 1290 97.1
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 2537.7 1299 96.8
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 2393.2 1310 91.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 2332.4 1315 88.1
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 2207.2 1312 83.6
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 2186.0 1311 82.9
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 2171.7 1317 81.7
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 2139.8 1323 82.6
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 2019.6 1323 76.7
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1837.4 1320 69.5
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1739.5 1003 84.8
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1435.6 1388 54.3
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1434.9 1382 54.0
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1432.5 1380 54.8
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1419.1 1321 54.8
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1412.9 1397 53.4
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1410.6 1387 53.2
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1406.7 1398 53.8
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1405.6 1371 53.8
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1392.9 1389 53.3
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1390.2 1453 51.6
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1384.0 1396 52.1
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1375.1 1399 51.9
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1373.2 1380 53.3
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1369.0 1379 52.9
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1366.3 1385 52.7
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1365.9 1351 53.7
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1358.6 1479 49.6
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1357.8 1453 51.3
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1357.8 1377 52.4
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1356.3 1377 52.2
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1350.1 1384 52.6
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1345.9 1388 50.6
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1344.3 1365 51.0
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1342.4 1411 51.4
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1335.9 1374 51.5
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1332.0 1381 51.8
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1332.0 1381 50.6
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1328.2 1382 51.0
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1324.3 1384 50.1
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1322.8 1407 51.1
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1321.2 1366 50.4
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1315.8 1384 50.2
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1315.4 1410 49.3
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1313.5 1378 50.8
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1310.0 1375 50.3
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1306.6 1378 49.8
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1293.5 1383 49.6
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1291.6 1377 51.1
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1291.2 1378 50.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1288.1 1390 49.7
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1284.2 1368 49.6
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1281.5 1383 49.4
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1270.0 1400 48.4
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1270.0 1321 50.9
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1270.0 1404 48.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1265.0 1405 48.3
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1253.0 1404 48.4
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1251.5 1346 50.0
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1250.0 1154 56.1
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1238.4 1342 50.7
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1237.2 1440 48.0
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1234.2 1473 47.1
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1221.5 1397 47.7
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1219.9 1311 49.7
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1216.4 1154 54.9
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1215.7 1310 49.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1206.0 1362 48.3
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1201.8 1394 46.6
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 1129 54.6
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1184.5 1401 47.3
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1176.0 1371 46.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1173.3 1368 47.8
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1140.9 1418 43.5
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1140.6 1355 47.7
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1107.0 1391 45.8
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1102.0 1340 45.4
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1090.9 1378 44.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 5.1e-310 1068.1 1076 51.6
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 3.5e-295 1018.8 981 53.1
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 6.3e-292 1008.1 1060 51.7
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.4e-291 1006.1 1059 51.4
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 9.0e-291 1004.2 944 53.4
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.8e-273 945.7 944 52.3
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.7e-241 840.5 1362 37.5
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 7.3e-232 808.5 1465 37.5
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 6.8e-222 775.4 1489 33.9
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.9e-219 767.3 883 49.0
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 8.4e-212 741.9 808 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.4e-211 741.1 1481 34.5
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 8.7e-209 731.9 726 51.0
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 2.2e-196 690.6 598 59.7
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.5e-181 641.3 755 47.8
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 2.9e-180 637.1 1308 34.1
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 3.9e-169 600.1 589 51.1
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.1e-166 592.0 570 51.9
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 2.2e-164 584.3 1263 32.9
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 4.2e-163 580.1 762 44.1
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.3e-160 570.5 784 41.2
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 8.8e-145 519.2 580 48.1
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.0e-144 518.1 880 37.3
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.4e-144 517.3 653 45.5
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.3e-131 473.8 566 46.5
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 2.9e-103 381.3 206 91.3
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 3.3e-91 341.3 381 50.1
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 3.8e-87 327.8 429 42.9
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 7.1e-86 323.6 314 54.1
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 8.7e-84 316.6 357 47.3
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 5.1e-68 264.2 1505 24.1
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.7e-67 260.0 309 45.6
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 1.2e-64 253.1 257 54.5
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 5.9e-64 250.8 1277 24.6
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-63 249.6 263 51.7
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 2.3e-60 238.8 329 41.3
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.1e-57 228.0 237 54.4
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 8.2e-50 203.8 203 48.3
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 3.5e-48 198.4 218 49.1
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.5e-48 198.0 298 37.6
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-44 186.0 256 39.5
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-43 181.4 450 28.4
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.3e-42 179.9 187 48.7
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 9.1e-41 173.7 185 49.7
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.9e-38 166.0 170 48.8
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 3.7e-34 151.8 183 44.8
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 2.7e-29 135.6 68 91.2
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 4.7e-29 134.8 96 65.6
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 7.5e-27 127.5 229 35.8
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.6e-24 119.8 80 66.2
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 7.7e-24 117.5 147 46.9
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 7.7e-24 117.5 69 69.6
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 7.7e-24 117.5 109 46.8
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.3e-23 116.7 154 38.3
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.0e-23 114.8 146 42.5
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 7.5e-19 100.9 115 44.3
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 2.2e-18 99.4 88 55.7
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 2.3e-15 89.4 118 39.0
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 6.6e-15 87.8 81 49.4
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-11 76.3 56 67.9
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-11 76.3 56 67.9
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 4.4e-11 75.1 48 72.9
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 2.2e-10 72.8 79 43.0
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.9e-10 72.4 56 66.1
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 2.9e-10 72.4 74 48.6
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.7e-10 72.0 56 66.1
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 4.9e-10 71.6 43 76.7
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.9e-10 71.6 51 72.5
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 4.1e-09 68.6 48 68.8
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.6e-08 66.6 74 50.0
FvH4_3g29280 Fragaria vesca HOM05D001335 ORTHO05D001184 2.0e-08 66.2 198 25.3
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 4.6e-08 65.1 165 26.7
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 2.3e-07 62.8 142 28.2
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 3.9e-07 62.0 118 34.7
DCAR_013764 Daucus carota HOM05D005961 ORTHO05D007391 3.3e-06 58.9 125 30.4
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 3.3e-06 58.9 51 52.9
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-06 58.5 34 64.7
CARHR158060 Cardamine hirsuta HOM05D002332 ORTHO05D002509 7.3e-06 57.8 150 30.7
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 7.3e-06 57.8 151 29.8
RcHm_v2.0_Chr5g0074851 Rosa chinensis HOM05D005961 ORTHO05D007391 9.5e-06 57.4 119 30.3


User provided reference genes

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